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| author | Eric <erimar77@users.noreply.github.com> | 2018-01-05 15:08:45 -0600 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-01-05 15:08:45 -0600 |
| commit | 4cd9bdedd735ac82e4494abf5def3c031edd4698 (patch) | |
| tree | b6b7624b5e99391fed0e727b420c091a6d067f1c /var | |
| parent | ea6ebedd0ec5dc10caba2904a1ca8baaa9ac7414 (diff) | |
| download | spack-4cd9bdedd735ac82e4494abf5def3c031edd4698.tar.gz spack-4cd9bdedd735ac82e4494abf5def3c031edd4698.tar.bz2 spack-4cd9bdedd735ac82e4494abf5def3c031edd4698.tar.xz spack-4cd9bdedd735ac82e4494abf5def3c031edd4698.zip | |
sailfish: Create new package (#6827)
* sailfish: Create new package
* sailfish: fix tbb dependency
* sailfish: fix dependency type
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/sailfish/package.py | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/sailfish/package.py b/var/spack/repos/builtin/packages/sailfish/package.py new file mode 100644 index 0000000000..d25db48c6f --- /dev/null +++ b/var/spack/repos/builtin/packages/sailfish/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Sailfish(CMakePackage): + """Sailfish is a tool for transcript quantification from RNA-seq data.""" + + homepage = "http://www.cs.cmu.edu/~ckingsf/software/sailfish" + url = "https://github.com/kingsfordgroup/sailfish/archive/v0.10.0.tar.gz" + + version('0.10.1', 'e6dab4cf3a39f346df7c28f40eb58cad') + + depends_on('boost@1.55:') + depends_on('tbb') |