diff options
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-affycoretools/package.py | 54 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/r-ff/package.py | 38 |
2 files changed, 92 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-affycoretools/package.py b/var/spack/repos/builtin/packages/r-affycoretools/package.py new file mode 100644 index 0000000000..8228cbe5a3 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-affycoretools/package.py @@ -0,0 +1,54 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAffycoretools(RPackage): + """Various wrapper functions that have been written to streamline + the more common analyses that a core Biostatistician might see.""" + + homepage = "https://www.bioconductor.org/packages/affycoretools/" + url = "https://git.bioconductor.org/packages/affycoretools" + + version('1.48.0', git='https://git.bioconductor.org/packages/affycoretools', commit='e0d52e34eead1ac45d3e60c59efd940e4889eb99') + + depends_on('r@3.4.0:3.4.9', when='@1.48.0') + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-affy', type=('build', 'run')) + depends_on('r-limma', type=('build', 'run')) + depends_on('r-gostats', type=('build', 'run')) + depends_on('r-gcrma', type=('build', 'run')) + depends_on('r-xtable', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-gplots', type=('build', 'run')) + depends_on('r-oligoclasses', type=('build', 'run')) + depends_on('r-reportingtools', type=('build', 'run')) + depends_on('r-hwriter', type=('build', 'run')) + depends_on('r-lattice', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-edger', type=('build', 'run')) + depends_on('r-rsqlite', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-ff/package.py b/var/spack/repos/builtin/packages/r-ff/package.py new file mode 100644 index 0000000000..d305ca34f7 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ff/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RFf(RPackage): + """memory-efficient storage of large data on disk and + fast access functions.""" + + homepage = "http://ff.r-forge.r-project.org/" + url = "https://cran.rstudio.com/src/contrib/ff_2.2-13.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/ff" + + version('2.2-13', '4adf8840d24cb6e2927a3ef885c86fcd') + + depends_on('r-bit', type=('build', 'run')) |