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(#13140)
* Added package py-python-oauth2, a dependency of py-jupyterhub@0.9.4. Depends on #13132, #13133 and #13134
* Remove optional dependencies
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is strict (#13243)
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* Methods setting the environment now do it separately for build and run
Before this commit the `*_environment` methods were setting
modifications to both the build-time and run-time environment
simultaneously. This might cause issues as the two environments
inherently rely on different preconditions:
1. The build-time environment is set before building a package, thus
the package prefix doesn't exist and can't be inspected
2. The run-time environment instead is set assuming the target package
has been already installed
Here we split each of these functions into two: one setting the
build-time environment, one the run-time.
We also adopt a fallback strategy that inspects for old methods and
executes them as before, but prints a deprecation warning to tty. This
permits to port packages to use the new methods in a distributed way,
rather than having to modify all the packages at once.
* Added a test that fails if any package uses the old API
Marked the test xfail for now as we have a lot of packages in that
state.
* Added a test to check that a package modified by a PR is up to date
This test can be used any time we deprecate a method call to ensure
that during the first modification of the package we update also
the deprecated calls.
* Updated documentation
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Python 3 metaclasses have a `__prepare__` method that lets us save the
class's dictionary before it is constructed. In Python 2 we had to walk
up the stack using our `caller_locals()` method to get at this. Using
`__prepare__` is much faster as it doesn't require us to use `inspect`.
This makes multimethods use the faster `__prepare__` method in Python3,
while still using `caller_locals()` in Python 2. We try to reduce the
use of caller locals using caching to speed up Python 2 a little bit.
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* eospac: avoid conflict with linux's getopt
* Update package.py
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Our importer was always parsing from source (which is considerably
slower) because the source size recorded in the .pyc file differed from
the size of the input file.
Override path_stats in the prepending importer to fool it into thinking
that the source size is the size *with* the prepended code.
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Since the backup file is only created on the first invocation, it will
contain the original file without any modifications. Further invocations
will then read the backup file, effectively reverting prior invocations.
This can be reproduced easily by trying to install likwid, which will
try to install into /usr/local. Work around this by creating a temporary
file to read from.
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* This updates stage names to use "spack-stage-" as a prefix.
This avoids removing non-Spack directories in "spack clean" as
c141e99 did (in this case so long as they don't contain the
prefix "spack-stage-"), and also addresses a follow-up issue
where Spack stage directories were not removed.
* Spack now does more-stringent checking of expected permissions for
staging directories. For a given stage root that includes a user
component, all directories before the user component that are
created by Spack are expected to match the permissions of their
parent; the user component and all deeper directories are expected
to be accessible to the user (read/write/execute).
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This feature generates a verification manifest for each installed
package and provides a command, "spack verify", which can be used to
compare the current file checksums/permissions with those calculated
at installed time.
Verification includes
* Checksums of files
* File permissions
* Modification time
* File size
Packages installed before this PR will be skipped during verification.
To verify such a package you must reinstall it.
The spack verify command has three modes.
* With the -a,--all option it will check every installed package.
* With the -f,--files option, it will check some specific files,
determine which package they belong to, and confirm that they have
not been changed.
* With the -s,--specs option or by default, it will check some
specific packages that no files havae changed.
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Turn off the python variant by default.
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fixes #13005
This commit fixes an issue with the name of the root directory for
module file hierarchies. Since #3206 the root folder was named after
the microarchitecture used for the spec, which is too specific and
not backward compatible for lmod hierarchies. Here we compute the
root folder name using the target family instead of the target name
itself and we add target information in the 'whatis' portion of the
module file.
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- Require Kokkos with c++14
- Update the case of CMake options
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* Add version 0.177
* Fix spacing
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* ntpoly: Define module directry when compiling with Fujitsu compiler.
* Delete quotes.
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From Python docs:
--
'surrogateescape' will represent any incorrect bytes as code points in
the Unicode Private Use Area ranging from U+DC80 to U+DCFF. These
private code points will then be turned back into the same bytes when
the surrogateescape error handler is used when writing data. This is
useful for processing files in an unknown encoding.
--
This will allow us to process files with unknown encodings.
To accommodate the case of self-extracting bash scripts, filter_file
can now stop filtering text input if a certain marker is found. The
marker must be passed at call time via the "stop_at" function argument.
At that point the file will be reopened in binary mode and copied
verbatim.
* use "surrogateescape" error handling to ignore unknown chars
* permit to stop filtering if a marker is found
* add unit tests for non-ASCII and mixed text/binary files
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* bugfix: install --only dependents works in env
includes regression testing
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* py-petsc4py: add version 3.12.0
* fix typo wrt maintainer
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Provide up to date specs for build options
Remove non-production versions
Format using autopep8 and flake8
Separate cmake options in adios2 2.4.0 version
Keep default as True as much as possible
Support for Python 2 and 3 for adios2 versions <= 2.4.0
Starting v2.5.0 only Python 3 is supported
Addressing review suggestions
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* Add new ACTS releases
* Update ACTS dependency requirements
* We can actually be more specific here
* The material plugin is gone as of ACTS v0.10.0
* Add 0.10.4 release
* Remove material mapping plugin
It was merged into core as of 0.10.x, and given ACTS' youth it is unlikely to have actual users at this point in time.
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`spack url stats` now also looks at packages' resources when outputting
statistics.
Example:
```
$ spack url stats
==> URL stats for 3531 packages:
--------------------------------------------------------------
stat versions % resources %
--------------------------------------------------------------
url 8335 89.3% 339 89.0%
schemes
https 6489 69.5% 93 24.4%
ftp 32 0.3% 8 2.1%
http 1763 18.9% 237 62.2%
file 51 0.5% 1 0.3%
checksums
md5 26 0.3% 0 0.0%
sha256 8306 89.0% 336 88.2%
no checksum 3 0.0% 3 0.8%
--------------------------------------------------------------
go 1 0.0% 0 0.0%
--------------------------------------------------------------
hg 7 0.1% 0 0.0%
--------------------------------------------------------------
no code 4 0.0% 0 0.0%
--------------------------------------------------------------
svn 4 0.0% 16 4.2%
--------------------------------------------------------------
git 981 10.5% 26 6.8%
branch 442 4.7% 4 1.0%
commit 362 3.9% 14 3.7%
no ref 36 0.4% 2 0.5%
tag 141 1.5% 6 1.6%
--------------------------------------------------------------
```
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Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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* Added package py-python-memcached, a dependency of python-oauth2
* Fixed line lengths
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