From 0e71e8716a1e62a417cb4407e26ff60e233dae87 Mon Sep 17 00:00:00 2001 From: Robert Blake Date: Tue, 2 Jun 2020 17:54:50 -0700 Subject: Add new package: sbml (#16898) * Adding a module for sbml. * Adding support for all the languages. * Update var/spack/repos/builtin/packages/sbml/package.py Co-authored-by: Greg Becker * Update var/spack/repos/builtin/packages/sbml/package.py Co-authored-by: Greg Becker Co-authored-by: Robert Blake Co-authored-by: Greg Becker --- var/spack/repos/builtin/packages/sbml/package.py | 122 +++++++++++++++++++++++ 1 file changed, 122 insertions(+) create mode 100644 var/spack/repos/builtin/packages/sbml/package.py diff --git a/var/spack/repos/builtin/packages/sbml/package.py b/var/spack/repos/builtin/packages/sbml/package.py new file mode 100644 index 0000000000..4c90d76bc2 --- /dev/null +++ b/var/spack/repos/builtin/packages/sbml/package.py @@ -0,0 +1,122 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Sbml(CMakePackage): + """Library for the Systems Biology Markup Language""" + + homepage = "https://sbml.org" + maintainers = ['rblake-llnl'] + + version('5.18.0', sha256='6c01be2306ec0c9656b59cb082eb7b90176c39506dd0f912b02e08298a553360') + version('5.17.0', sha256='189216e1472777e4464b791c506b79267d07a5454cb23ac991452711f8e0ed3a') + version('5.16.0', sha256='c6855481434dd2a667fef73e1ff2feade509aa2f3a76d4d06e29022975ce1496') + version('5.15.0', sha256='c779c2a8a97c5480fe044028099d928a327261fb68cf08657ec8d4f3b3fc0a21') + version('5.13.0', sha256='e58430edb1b454d7414bcf1be0549bf6860a6d19d73232eb58211559485c2c05') + version('5.12.0', sha256='c637494b19269947fc90ebe479b624d36f80d1cb5569e45cd76ddde81dd28ae4') + version('5.11.4', sha256='6429188b689b331b0b8f2c8b55b3f2339196ccd4c93191648fa767e1d02152a3') + version('5.11.0', sha256='b21931ca7461494915c617b30d4a9f2cafe831d6ce74989b3e5874e6e3c3f72b') + version('5.10.2', sha256='83f32a143cf657672b1050f5f79d3591c418fc59570d180fb1f39b103f4e5286') + version('5.10.0', sha256='2cd8b37018ce8b1df869c8c182803addbce6d451512ae25a7f527b49981f0966') + + def url_for_version(self, version): + url = "https://downloads.sourceforge.net/project/sbml/libsbml/{0}/stable/libSBML-{1}-core-plus-packages-src.tar.gz".format(version, version) + return url + + variant('python', default=False, + description='Build with python support') + depends_on('python', when="+python") + + variant('perl', default=False, + description='Build with perl support') + depends_on('perl', when="+perl") + + variant('ruby', default=False, + description='Build with ruby support') + depends_on('ruby', when="+ruby") + + variant('r', default=False, + description='Build with R support') + depends_on('r', when="+r") + + variant('octave', default=False, + description='Build with octave support') + depends_on('octave', when="+octave") + + variant('matlab', default=False, + description='Build with matlab support') + depends_on('matlab', when="+matlab") + + variant('java', default=False, + description='Build with java support') + depends_on('java', when="+java") + + variant('mono', default=False, + description='Build with mono support') + depends_on('mono', when="+mono") + + depends_on('swig@2:', type='build') + depends_on('cmake', type='build') + depends_on('zlib') + depends_on('bzip2') + depends_on('libxml2') + + def cmake_args(self): + spec = self.spec + args = [ + "-DENABLE_COMP:BOOL=ON", + "-DENABLE_FBC:BOOL=ON", + "-DENABLE_GROUPS:BOOL=ON", + "-DENABLE_LAYOUT:BOOL=ON", + "-DENABLE_QUAL:BOOL=ON", + "-DENABLE_RENDER:BOOL=ON", + "-DWITH_BZIP2:BOOL=ON", + "-DWITH_CHECK:BOOL=OFF", + "-DWITH_CPP_NAMESPACE:BOOL=OFF", + "-DWITH_DOXYGEN:BOOL=OFF", + "-DWITH_EXAMPLES:BOOL=OFF", + "-DWITH_EXPAT:BOOL=OFF", + "-DWITH_LIBXML:BOOL=ON", + "-DWITH_SWIG:BOOL=ON", + "-DWITH_WALL:BOOL=ON", + "-DWITH_XERCES:BOOL=OFF", + "-DWITH_ZLIB:BOOL=ON", + ] + if '+python' in spec: + args.extend([ + "-DWITH_PYTHON:BOOL=ON", + "-DWITH_PYTHON_INCLUDE:PATH=%s" % spec['python'].prefix, + ]) + else: + args.append('-DWITH_PYTHON:BOOL=ON') + + args.append(self.define_from_variant('WITH_CSHARP', 'mono')) + + if '+java' in spec: + args.extend([ + "-DWITH_JAVA:BOOL=ON", + "-DJDK_PATH:STRING=%s" % spec['java'].prefix, + "-DJAVA_INCLUDE_PATH:STRING=%s" % spec['java'].prefix, + ]) + else: + args.append('-DWITH_JAVA:BOOL=OFF') + + if '+matlab' in spec: + args.extend([ + "-DWITH_MATLAB:BOOL=ON", + "-DMATLAB_ROOT_PATH:PATH=%s" % spec['matlab'].prefix, + "-DWITH_MATLAB_MEX:BOOL=ON", + ]) + else: + args.append('-DWITH_MATLAB:BOOL=OFF') + + args.append(self.define_from_variant('WITH_OCTAVE', 'octave')) + args.append(self.define_from_variant('WITH_PERL', 'perl')) + args.append(self.define_from_variant('WITH_R', 'r')) + args.append(self.define_from_variant('WITH_RUBY', 'ruby')) + + return args -- cgit v1.2.3-60-g2f50