From 1fff48641fa8cfc1147a38726924be97005b9f8f Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Thu, 31 Aug 2017 20:01:09 -0500 Subject: kmergenie: new package (#5257) --- .../repos/builtin/packages/kmergenie/package.py | 43 ++++++++++++++++++++++ 1 file changed, 43 insertions(+) create mode 100644 var/spack/repos/builtin/packages/kmergenie/package.py diff --git a/var/spack/repos/builtin/packages/kmergenie/package.py b/var/spack/repos/builtin/packages/kmergenie/package.py new file mode 100644 index 0000000000..9e6d0e5312 --- /dev/null +++ b/var/spack/repos/builtin/packages/kmergenie/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Kmergenie(MakefilePackage): + """KmerGenie estimates the best k-mer length for genome de novo assembly. + """ + + homepage = "http://kmergenie.bx.psu.edu/" + url = "http://kmergenie.bx.psu.edu/kmergenie-1.7044.tar.gz" + + version('1.7044', '407209c8181f1631ecb79b0ca735d18f') + + depends_on('python', type=('build', 'run')) + depends_on('py-setuptools', type=('build', 'run')) + depends_on('r', type=('build', 'run')) + depends_on('zlib') + + def install(self, spec, prefix): + install_tree(self.stage.source_path, prefix.bin) -- cgit v1.2.3-70-g09d2