From 2072c93dc87c75e6d940a4d9aa41e5228e5acb29 Mon Sep 17 00:00:00 2001 From: manifest Date: Tue, 1 Dec 2020 01:25:49 +1030 Subject: Added bedtools2 v2.29.2 and and py-bedtools versions up to v0.8.0 (#19744) --- .../repos/builtin/packages/bedtools2/package.py | 1 + .../builtin/packages/py-pybedtools/package.py | 22 +++++++++++++++++----- 2 files changed, 18 insertions(+), 5 deletions(-) diff --git a/var/spack/repos/builtin/packages/bedtools2/package.py b/var/spack/repos/builtin/packages/bedtools2/package.py index b9c1cd06d1..a6874c9933 100644 --- a/var/spack/repos/builtin/packages/bedtools2/package.py +++ b/var/spack/repos/builtin/packages/bedtools2/package.py @@ -15,6 +15,7 @@ class Bedtools2(Package): homepage = "https://github.com/arq5x/bedtools2" url = "https://github.com/arq5x/bedtools2/archive/v2.26.0.tar.gz" + version('2.29.2', sha256='bc2f36b5d4fc9890c69f607d54da873032628462e88c545dd633d2c787a544a5') version('2.27.1', sha256='edcac089d84e63a51f85c3c189469daa7d42180272130b046856faad3cf79112') version('2.27.0', sha256='e91390b567e577d337c15ca301e264b0355441f5ab90fa4f971622e3043e0ca0') version('2.26.0', sha256='15db784f60a11b104ccbc9f440282e5780e0522b8d55d359a8318a6b61897977') diff --git a/var/spack/repos/builtin/packages/py-pybedtools/package.py b/var/spack/repos/builtin/packages/py-pybedtools/package.py index fc8e0fe7c7..9c17a5b559 100644 --- a/var/spack/repos/builtin/packages/py-pybedtools/package.py +++ b/var/spack/repos/builtin/packages/py-pybedtools/package.py @@ -12,12 +12,24 @@ class PyPybedtools(PythonPackage): homepage = "http://daler.github.io/pybedtools" url = "https://github.com/daler/pybedtools/archive/v0.6.9.tar.gz" - version('0.6.9', sha256='2639e80917999e76572017fd93757e8d7ceb384f0b92647ccfdd23a0d60def7c') + version('0.8.0', sha256='f0d9f24135d13d6d02d5c0d1bded771848d3642b00a2d3c3d86b2a1fcd5ce532') + version('0.7.10', sha256='bc81c1655e998d8090d852f109925fc7fd3dad3ff90371cf80807dd4438a826a') + version('0.7.9', sha256='49cdb62b81bb6bf28fecf6fc9519aa31e333d150347ca4ce2d2cd2aa5ec2ca57') + version('0.7.8', sha256='0d49d92ba6d6cec85956cc4f947c9f431dc30aeea05125643a1b8786a59dc402') + version('0.7.7', sha256='e4f87da5009928046ac233d2c8a7c2121820aa6d74de45922ec1405464c62862') + version('0.7.6', sha256='639880a45ef60bd10d4ed31e6e7f7e901a6dbd909373df8f63f5aeccde446754') + version('0.7.5', sha256='ef221c38281cb9be1e8014d6513f6fd9b2722306a70e4ac2484d0d7034bc5b03') + version('0.7.4', sha256='39172a31c59ccf355fcff885f652cdc825341cabbab4ba78ac03862c42caa9da') + version('0.7.3', sha256='ba6875297116b776cb1eb79ddb9fe24db9cbee8f6922940f84984d533ef9000b') + version('0.7.2', sha256='0d0a80a42667742d53b1ef1947f4645dc16b060c7aacb4721c48f8028cc33c5e') + version('0.6.9', sha256='2639e80917999e76572017fd93757e8d7ceb384f0b92647ccfdd23a0d60def7c') + + depends_on('py-setuptools', type='build') + depends_on('py-cython', type='build') depends_on('bedtools2', type='run') - depends_on('py-cython', type=('build', 'run')) - depends_on('py-pysam', type=('build', 'run')) + + depends_on('py-numpy', type=('build', 'run')) depends_on('py-pandas', type=('build', 'run')) + depends_on('py-pysam', type=('build', 'run')) depends_on('py-six', type=('build', 'run')) - depends_on('py-numpy', type=('build', 'run')) - depends_on('py-setuptools', type='build') -- cgit v1.2.3-70-g09d2