From 26ff36f05f3f1a79c300868f55216cd7785b4f03 Mon Sep 17 00:00:00 2001 From: Eric Date: Tue, 6 Feb 2018 06:54:05 -0600 Subject: samblaster: Create new package (#7188) --- .../repos/builtin/packages/samblaster/package.py | 40 ++++++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 var/spack/repos/builtin/packages/samblaster/package.py diff --git a/var/spack/repos/builtin/packages/samblaster/package.py b/var/spack/repos/builtin/packages/samblaster/package.py new file mode 100644 index 0000000000..6f571ecd16 --- /dev/null +++ b/var/spack/repos/builtin/packages/samblaster/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Samblaster(MakefilePackage): + """A tool to mark duplicates and extract discordant and split reads from + sam files.""" + + homepage = "https://github.com/GregoryFaust/samblaster" + url = "https://github.com/GregoryFaust/samblaster/archive/v.0.1.24.tar.gz" + + version('0.1.24', '885d5782cc277865dfb086fc0a20243e') + version('0.1.23', '95d33b6fcceaa38a9bd79014446b4545') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('samblaster', prefix.bin) -- cgit v1.2.3-70-g09d2