From 2a4b7a4dc4a5747211729123ea40b20b797ea303 Mon Sep 17 00:00:00 2001 From: Levi Baber Date: Sat, 11 Aug 2018 09:26:16 -0500 Subject: r-goplot: new package (#8942) --- .../repos/builtin/packages/r-goplot/package.py | 49 ++++++++++++++++++++++ 1 file changed, 49 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-goplot/package.py diff --git a/var/spack/repos/builtin/packages/r-goplot/package.py b/var/spack/repos/builtin/packages/r-goplot/package.py new file mode 100644 index 0000000000..13ce8a1bc5 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-goplot/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGoplot(RPackage): + """Implementation of multilayered visualizations for enhanced graphical + representation of functional analysis data. It combines and integrates + omics data derived from expression and functional annotation enrichment + analyses. Its plotting functions have been developed with an + hierarchical structure in mind: starting from a general overview to + identify the most enriched categories (modified bar plot, bubble plot) + to a more detailed one displaying different types of relevant + information for the molecules in a given set of categories + (circle plot, chord plot, cluster plot, Venn diagram, heatmap).""" + + homepage = "https://github.com/wencke/wencke.github.io/issues" + url = "https://cran.r-project.org/src/contrib/GOplot_1.0.2.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/GOplot" + + version('1.0.2', sha256='3ddaa2b6d1297ad6daad30d18af708adf43d86e8804b1b92fa29dfbf26d80df9') + + depends_on('r@3.2.3:', type=('build', 'run')) + depends_on('r-ggplot2@2.0.0:', type=('build', 'run')) + depends_on('r-ggdendro@0.1-17:', type=('build', 'run')) + depends_on('r-gridextra@2.0.0:', type=('build', 'run')) + depends_on('r-rcolorbrewer@1.1.2:', type=('build', 'run')) -- cgit v1.2.3-70-g09d2