From 2fa918f32c102929401c19b3b4bd6f61e72666a4 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Thu, 22 Jun 2017 11:12:19 -0500 Subject: gmap-gsnap: adding gmap-gsnap package (#4570) --- .../repos/builtin/packages/gmap-gsnap/package.py | 36 ++++++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 var/spack/repos/builtin/packages/gmap-gsnap/package.py diff --git a/var/spack/repos/builtin/packages/gmap-gsnap/package.py b/var/spack/repos/builtin/packages/gmap-gsnap/package.py new file mode 100644 index 0000000000..e2c79848a0 --- /dev/null +++ b/var/spack/repos/builtin/packages/gmap-gsnap/package.py @@ -0,0 +1,36 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class GmapGsnap(AutotoolsPackage): + """GMAP: A Genomic Mapping and Alignment Program for + mRNA and EST Sequences, and GSNAP: Genomic Short-read + Nucleotide Alignment Program""" + + homepage = "http://research-pub.gene.com/gmap/" + url = "http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-06-16.tar.gz" + + version('2017-06-16', 'fcc91b8bdd4bf12ae3124de0c00db0c0') -- cgit v1.2.3-70-g09d2