From 3d1cfaeb393008255844ebc8c67af98800191fb0 Mon Sep 17 00:00:00 2001 From: Levi Baber Date: Tue, 14 Aug 2018 07:14:06 -0500 Subject: r-rots: new package (#8941) * r-rots: new package * r-rots: hash is a commit * r-rots: dep types --- var/spack/repos/builtin/packages/r-rots/package.py | 39 ++++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-rots/package.py diff --git a/var/spack/repos/builtin/packages/r-rots/package.py b/var/spack/repos/builtin/packages/r-rots/package.py new file mode 100644 index 0000000000..0bf0fcb064 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-rots/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RRots(Package): + """Calculates the Reproducibility-Optimized Test Statistic (ROTS) + for differential testing in omics data.""" + + homepage = "https://bioconductor.org/packages/release/bioc/html/ROTS.html" + git = "https://git.bioconductor.org/packages/ROTS.git" + + version('1.8.0', commit='02e3c6455bb1afe7c4cc59ad6d4d8bae7b01428b') + + depends_on('r@3.5.0:3.5.9', when='@1.8.0:', type=('build', 'run')) + depends_on('r-rcpp', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) -- cgit v1.2.3-70-g09d2