From 4c254c6c9f67a43247c0be5c3da256e057c958d8 Mon Sep 17 00:00:00 2001
From: ilbiondo <61497728+ilbiondo@users.noreply.github.com>
Date: Thu, 5 Nov 2020 18:02:43 +0100
Subject: bamaddrg package (#19729)

* bamaddrg package

* Change version to URL rather than git
---
 .../repos/builtin/packages/bamaddrg/package.py     | 24 ++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100644 var/spack/repos/builtin/packages/bamaddrg/package.py

diff --git a/var/spack/repos/builtin/packages/bamaddrg/package.py b/var/spack/repos/builtin/packages/bamaddrg/package.py
new file mode 100644
index 0000000000..c828d048aa
--- /dev/null
+++ b/var/spack/repos/builtin/packages/bamaddrg/package.py
@@ -0,0 +1,24 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Bamaddrg(MakefilePackage):
+    """bamaddrg adds read groups to input BAM files,
+    streams BAM output on stdout"""
+
+    homepage = "https://github.com/ekg/bamaddrg"
+    url      = "https://github.com/ilbiondo/bamaddrg/archive/v0.1.tar.gz"
+    git      = "https://github.com/ilbiondo/bamaddrg.git"
+
+    version('0.1', sha256='725a689d8326d72f865837b231005a9211d6c70a25b7a3a754df4f90d2996355')
+
+    depends_on("bamtools", type="build")
+
+    def setup_build_environment(self, env):
+
+        env.set('BAMTOOLS_ROOT', self.spec['bamtools'].prefix)
+        env.set('PREFIX', self.prefix)
-- 
cgit v1.2.3-70-g09d2