From 4cbe1b338fbe5ddd04f4bc49e8eeef9a1e822535 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Thu, 13 Jul 2017 08:26:17 -0500 Subject: last: new package (#4729) --- var/spack/repos/builtin/packages/last/package.py | 39 ++++++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 var/spack/repos/builtin/packages/last/package.py diff --git a/var/spack/repos/builtin/packages/last/package.py b/var/spack/repos/builtin/packages/last/package.py new file mode 100644 index 0000000000..49d561f89b --- /dev/null +++ b/var/spack/repos/builtin/packages/last/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Last(MakefilePackage): + """LAST finds similar regions between sequences, and aligns them. It is + designed for comparing large datasets to each other (e.g. vertebrate + genomes and/or large numbers of DNA reads).""" + + homepage = "http://last.cbrc.jp/" + url = "http://last.cbrc.jp/last-869.zip" + + version('869', '12dced14418fb924a1b0604593274973') + + def install(self, spec, prefix): + make('install', 'prefix=%s' % prefix) -- cgit v1.2.3-70-g09d2