From 4cd9bdedd735ac82e4494abf5def3c031edd4698 Mon Sep 17 00:00:00 2001 From: Eric Date: Fri, 5 Jan 2018 15:08:45 -0600 Subject: sailfish: Create new package (#6827) * sailfish: Create new package * sailfish: fix tbb dependency * sailfish: fix dependency type --- .../repos/builtin/packages/sailfish/package.py | 37 ++++++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 var/spack/repos/builtin/packages/sailfish/package.py diff --git a/var/spack/repos/builtin/packages/sailfish/package.py b/var/spack/repos/builtin/packages/sailfish/package.py new file mode 100644 index 0000000000..d25db48c6f --- /dev/null +++ b/var/spack/repos/builtin/packages/sailfish/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Sailfish(CMakePackage): + """Sailfish is a tool for transcript quantification from RNA-seq data.""" + + homepage = "http://www.cs.cmu.edu/~ckingsf/software/sailfish" + url = "https://github.com/kingsfordgroup/sailfish/archive/v0.10.0.tar.gz" + + version('0.10.1', 'e6dab4cf3a39f346df7c28f40eb58cad') + + depends_on('boost@1.55:') + depends_on('tbb') -- cgit v1.2.3-70-g09d2