From 4d5b13627058f6c6c8474aeef62813b1ba22d0e1 Mon Sep 17 00:00:00 2001 From: Justin Stanley Date: Fri, 7 Dec 2018 19:39:07 -0600 Subject: scallop: new package at 0.10.3 (#10041) --- .../repos/builtin/packages/scallop/package.py | 26 ++++++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 var/spack/repos/builtin/packages/scallop/package.py diff --git a/var/spack/repos/builtin/packages/scallop/package.py b/var/spack/repos/builtin/packages/scallop/package.py new file mode 100644 index 0000000000..d02c51fc86 --- /dev/null +++ b/var/spack/repos/builtin/packages/scallop/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Scallop(AutotoolsPackage): + """Scallop is a reference-based transcriptome assembler for RNA-seq""" + + homepage = "https://github.com/Kingsford-Group/scallop" + url = "https://github.com/Kingsford-Group/scallop/releases/download/v0.10.3/scallop-0.10.3.tar.gz" + + version('0.10.3', sha256='04eb3ab27ed8c7ae38e1780d6b2af16b6a2c01807ffafd59e819d33bfeff58a0') + + depends_on('clp') + depends_on('boost') + depends_on('htslib@1.5:') + + def configure_args(self): + return [ + '--with-clp={0}'.format(self.spec['clp'].prefix), + '--with-htslib={0}'.format(self.spec['htslib'].prefix), + '--with-boost={0}'.format(self.spec['boost'].prefix), + ] -- cgit v1.2.3-60-g2f50