From 554d4045fad6fe1de1e735f93a829e85f91b51d4 Mon Sep 17 00:00:00 2001 From: Eric Date: Sat, 16 Dec 2017 20:34:53 -0600 Subject: DeNovoGear: Create new package (#6699) --- .../repos/builtin/packages/denovogear/package.py | 43 ++++++++++++++++++++++ 1 file changed, 43 insertions(+) create mode 100644 var/spack/repos/builtin/packages/denovogear/package.py diff --git a/var/spack/repos/builtin/packages/denovogear/package.py b/var/spack/repos/builtin/packages/denovogear/package.py new file mode 100644 index 0000000000..64a1d0f619 --- /dev/null +++ b/var/spack/repos/builtin/packages/denovogear/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Denovogear(CMakePackage): + """DeNovoGear is a software package to detect de novo mutations using + next-generation sequencing data. It supports the analysis of many + differential experimental designs and uses advanced statistical models + to reduce the false positve rate.""" + + homepage = "https://github.com/denovogear/denovogear" + url = "https://github.com/denovogear/denovogear/archive/v1.1.1.tar.gz" + + version('1.1.1', 'da30e46851c3a774653e57f98fe62e5f') + version('1.1.0', '7d441d56462efb7ff5d3a6f6bddfd8b9') + + depends_on('cmake@3.1:', type=('build')) + depends_on('boost@1.47:1.60', type=('build')) + depends_on('htslib@1.2:', type=('build')) + depends_on('eigen', type=('build')) -- cgit v1.2.3-70-g09d2