From 5f0e1514acb5bb89728c53955968709ce7a7fed6 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Thu, 20 Jul 2017 13:16:32 -0500 Subject: kentutils: new pacakge (#4831) --- .../repos/builtin/packages/kentutils/package.py | 52 ++++++++++++++++++++++ 1 file changed, 52 insertions(+) create mode 100644 var/spack/repos/builtin/packages/kentutils/package.py diff --git a/var/spack/repos/builtin/packages/kentutils/package.py b/var/spack/repos/builtin/packages/kentutils/package.py new file mode 100644 index 0000000000..65d46f563d --- /dev/null +++ b/var/spack/repos/builtin/packages/kentutils/package.py @@ -0,0 +1,52 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Kentutils(MakefilePackage): + """Jim Kent command line bioinformatic utilities""" + + homepage = "https://github.com/ENCODE-DCC/kentUtils" + url = "https://github.com/ENCODE-DCC/kentUtils" + + version('302.1', git='https://github.com/ENCODE-DCC/kentUtils.git', commit='d8376c5d52a161f2267346ed3dc94b5dce74c2f9') + + depends_on('libpng') + depends_on('openssl') + + # Actually depends on mysql, but mariadb works for now until mysql is + # available + depends_on('mariadb') + + conflicts('%cce') + conflicts('%clang') + conflicts('%intel') + conflicts('%nag') + conflicts('%pgi') + conflicts('%xl') + conflicts('%xl_r') + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) -- cgit v1.2.3-60-g2f50