From 605c8e65b3f1177eda57e4f346aaecb6e1a76ca6 Mon Sep 17 00:00:00 2001 From: Yifan Zhu Date: Wed, 8 Nov 2017 14:58:04 -0600 Subject: r-mzid: created new package (#6186) --- var/spack/repos/builtin/packages/r-mzid/package.py | 46 ++++++++++++++++++++++ 1 file changed, 46 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-mzid/package.py diff --git a/var/spack/repos/builtin/packages/r-mzid/package.py b/var/spack/repos/builtin/packages/r-mzid/package.py new file mode 100644 index 0000000000..cb23814ea8 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-mzid/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RMzid(RPackage): + """A parser for mzIdentML files implemented using the XML package. The + parser tries to be general and able to handle all types of mzIdentML + files with the drawback of having less 'pretty' output than a vendor + specific parser. Please contact the maintainer with any problems and + supply an mzIdentML file so the problems can be fixed quickly.""" + + homepage = "https://www.bioconductor.org/packages/mzID/" + url = "https://git.bioconductor.org/packages/mzID" + + version('1.14.0', git='https://git.bioconductor.org/packages/mzID', commit='1c53aa6523ae61d3ebb13381381fc119d6cc6115') + + depends_on('r-xml', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-doparallel', type=('build', 'run')) + depends_on('r-foreach', type=('build', 'run')) + depends_on('r-iterators', type=('build', 'run')) + depends_on('r-protgenerics', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.14.0') -- cgit v1.2.3-70-g09d2