From 619e298b8da884a3211cda461885971ef88244d4 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Wed, 16 Aug 2017 00:05:16 -0500 Subject: cdhit: new package (#5085) --- var/spack/repos/builtin/packages/cdhit/package.py | 49 +++++++++++++++++++++++ 1 file changed, 49 insertions(+) create mode 100644 var/spack/repos/builtin/packages/cdhit/package.py diff --git a/var/spack/repos/builtin/packages/cdhit/package.py b/var/spack/repos/builtin/packages/cdhit/package.py new file mode 100644 index 0000000000..8651466ef5 --- /dev/null +++ b/var/spack/repos/builtin/packages/cdhit/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Cdhit(MakefilePackage): + """CD-HIT is a very widely used program for clustering and comparing + protein or nucleotide sequences.""" + + homepage = "http://cd-hit.org/" + url = "https://github.com/weizhongli/cdhit/archive/V4.6.8.tar.gz" + + version('4.6.8', 'bdd73ec0cceab6653aab7b31b57c5a8b') + + variant('openmp', default=True, description='Compile with multi-threading support') + + depends_on('perl', type=('build', 'run')) + + def build(self, spec, prefix): + mkdirp(prefix.bin) + if '~openmp' in spec: + make('openmp=no') + else: + make() + + def setup_environment(self, spack_env, run_env): + spack_env.set('PREFIX', prefix.bin) -- cgit v1.2.3-60-g2f50