From 7d800a0fc2d94cad14e825faa27e1f5b2d2cbed8 Mon Sep 17 00:00:00 2001
From: Eric <erimar77@users.noreply.github.com>
Date: Sat, 16 Dec 2017 20:47:11 -0600
Subject: breseq: Create new package (#6648)
---
var/spack/repos/builtin/packages/breseq/package.py | 44 ++++++++++++++++++++++
1 file changed, 44 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/breseq/package.py
diff --git a/var/spack/repos/builtin/packages/breseq/package.py b/var/spack/repos/builtin/packages/breseq/package.py
new file mode 100644
index 0000000000..d0b8c43706
--- /dev/null
+++ b/var/spack/repos/builtin/packages/breseq/package.py
@@ -0,0 +1,44 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Breseq(AutotoolsPackage):
+ """breseq is a computational pipeline for finding mutations relative to a
+ reference sequence in short-read DNA re-sequencing data for haploid
+ microbial-sized genomes."""
+
+ homepage = "http://barricklab.org/breseq"
+ url = "https://github.com/barricklab/breseq/archive/v0.31.1.tar.gz"
+
+ version('0.31.1', 'a4e602d5481f8692833ba3d5a3cd0394')
+
+ depends_on('autoconf', type='build')
+ depends_on('automake', type='build')
+ depends_on('libtool', type='build')
+ depends_on('m4', type='build')
+
+ depends_on('bedtools2', type='run')
+ depends_on('r', type='run')
--
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