From 8038945145d9e3777bbf48a37a65366b54263558 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Mon, 24 Jul 2017 18:02:20 -0500 Subject: structure: new package (#4879) * structure: new pacakge * fixing package structure (not a pun) --- .../repos/builtin/packages/structure/package.py | 47 ++++++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 var/spack/repos/builtin/packages/structure/package.py diff --git a/var/spack/repos/builtin/packages/structure/package.py b/var/spack/repos/builtin/packages/structure/package.py new file mode 100644 index 0000000000..abe1ee76e8 --- /dev/null +++ b/var/spack/repos/builtin/packages/structure/package.py @@ -0,0 +1,47 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Structure(MakefilePackage): + """Structure is a free software package for using multi-locus genotype + data to investigate population structure.""" + + homepage = "http://web.stanford.edu/group/pritchardlab/structure.html" + url = "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz" + + version('2.3.4', '4e0591678cdbfe79347d272b5dceeda1') + + depends_on('jdk', type=('build', 'run')) + + def url_for_version(self, version): + url = "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v{0}/structure_kernel_source.tar.gz" + return url.format(version) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('structure', prefix.bin) + install('mainparams', prefix.bin) + install('extraparams', prefix.bin) -- cgit v1.2.3-60-g2f50