From 8861fe029426649c15f273575e5d7e260c2febc6 Mon Sep 17 00:00:00 2001
From: George Young <A-N-Other@users.noreply.github.com>
Date: Wed, 5 Jul 2023 13:36:55 +0100
Subject: salmon: patching to build with %gcc@13: (#38553)

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
---
 var/spack/repos/builtin/packages/salmon/package.py | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/var/spack/repos/builtin/packages/salmon/package.py b/var/spack/repos/builtin/packages/salmon/package.py
index fbc9224640..553a2d1767 100644
--- a/var/spack/repos/builtin/packages/salmon/package.py
+++ b/var/spack/repos/builtin/packages/salmon/package.py
@@ -85,6 +85,15 @@ class Salmon(CMakePackage):
             when="@{0}".format(ver),
         )
 
+    # `%gcc13:` requires `<cstdint>` to be manually included. Fixed upstream,
+    # so we patch to allow building of previous salmon versions
+    patch(
+        "https://github.com/COMBINE-lab/salmon/commit/ffb2a11.patch?full_index=1",
+        sha256="5ed3512bae665c1d72002911ab9ee6d213f10df63019ebd9e8e0ecde03823a73",
+        when="@:1.10.1%gcc@13:",
+        level=1,
+    )
+
     def patch(self):
         # remove static linking to libstdc++
         filter_file("-static-libstdc++", "", "CMakeLists.txt", string=True)
-- 
cgit v1.2.3-70-g09d2