From 8a02ef4d51a08ed8bcdd97e971e514a5af75c5cb Mon Sep 17 00:00:00 2001 From: ketsubouchi Date: Thu, 20 Aug 2020 16:55:05 +0900 Subject: bwa: patch Makefile to permit the use of compilers other than GCC (#18189) --- var/spack/repos/builtin/packages/bwa/package.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/var/spack/repos/builtin/packages/bwa/package.py b/var/spack/repos/builtin/packages/bwa/package.py index 5f2d3ff178..266ac915e3 100644 --- a/var/spack/repos/builtin/packages/bwa/package.py +++ b/var/spack/repos/builtin/packages/bwa/package.py @@ -36,6 +36,8 @@ class Bwa(Package): zlib_inc_path, 'Makefile') filter_file(r'^LIBS=', "LIBS=-L%s " % spec['zlib'].prefix.lib, 'Makefile') + # use spack C compiler + filter_file('^CC=.*', 'CC={0}'.format(spack_cc), 'Makefile') make() mkdirp(prefix.bin) -- cgit v1.2.3-70-g09d2