From 8cbd349cb4c2420e64de138e848cbeaad232ec1d Mon Sep 17 00:00:00 2001 From: Todd Gamblin Date: Sat, 12 Oct 2019 01:49:54 -0700 Subject: checksums: fix packages that needed new download locations Some packages had incorrect checksums because they needed to be downloaded from a new place or the package needed tweaking somehow. These packages to sha256 and the new checksums have been verified by fetching over https. --- var/spack/repos/builtin/packages/ape/package.py | 2 +- var/spack/repos/builtin/packages/archer/package.py | 2 +- var/spack/repos/builtin/packages/astra/package.py | 2 +- var/spack/repos/builtin/packages/converge/package.py | 10 +++++----- var/spack/repos/builtin/packages/cppad/package.py | 2 +- .../repos/builtin/packages/cpprestsdk/package.py | 2 +- var/spack/repos/builtin/packages/dislin/package.py | 3 +-- var/spack/repos/builtin/packages/fenics/package.py | 10 ---------- var/spack/repos/builtin/packages/fimpute/package.py | 2 +- var/spack/repos/builtin/packages/fseq/package.py | 4 ++-- .../repos/builtin/packages/gnu-prolog/package.py | 4 ++-- var/spack/repos/builtin/packages/h5hut/package.py | 4 ++-- var/spack/repos/builtin/packages/hadoop/package.py | 5 ++--- var/spack/repos/builtin/packages/harminv/package.py | 2 +- var/spack/repos/builtin/packages/hpx5/package.py | 19 +++++++++---------- var/spack/repos/builtin/packages/hstr/package.py | 2 +- var/spack/repos/builtin/packages/libbeato/package.py | 4 ++-- var/spack/repos/builtin/packages/lsof/package.py | 2 +- var/spack/repos/builtin/packages/nektar/package.py | 2 +- var/spack/repos/builtin/packages/ocaml/package.py | 6 +++--- var/spack/repos/builtin/packages/octopus/package.py | 10 +++++----- var/spack/repos/builtin/packages/openmc/package.py | 2 +- .../repos/builtin/packages/parmgridgen/package.py | 4 ++-- var/spack/repos/builtin/packages/pgi/package.py | 15 +++++---------- var/spack/repos/builtin/packages/porta/package.py | 4 ++-- var/spack/repos/builtin/packages/psi4/package.py | 4 ++-- var/spack/repos/builtin/packages/pslib/package.py | 4 ++-- var/spack/repos/builtin/packages/pstreams/package.py | 4 ++-- var/spack/repos/builtin/packages/py-opppy/package.py | 2 +- var/spack/repos/builtin/packages/py-perf/package.py | 6 +++--- .../repos/builtin/packages/py-performance/package.py | 4 ++-- var/spack/repos/builtin/packages/py-tomopy/package.py | 2 +- .../repos/builtin/packages/py-udunits/package.py | 2 +- var/spack/repos/builtin/packages/r-abadata/package.py | 4 ++-- var/spack/repos/builtin/packages/r-acde/package.py | 4 ++-- .../repos/builtin/packages/r-affydata/package.py | 4 ++-- var/spack/repos/builtin/packages/raft/package.py | 2 +- var/spack/repos/builtin/packages/snpeff/package.py | 4 ++-- var/spack/repos/builtin/packages/stress/package.py | 8 +++++--- var/spack/repos/builtin/packages/xdmf3/package.py | 2 +- var/spack/repos/builtin/packages/yorick/package.py | 2 +- 41 files changed, 83 insertions(+), 99 deletions(-) diff --git a/var/spack/repos/builtin/packages/ape/package.py b/var/spack/repos/builtin/packages/ape/package.py index 52c0198802..76633a1498 100644 --- a/var/spack/repos/builtin/packages/ape/package.py +++ b/var/spack/repos/builtin/packages/ape/package.py @@ -13,7 +13,7 @@ class Ape(Package): homepage = "http://www.tddft.org/programs/APE/" url = "http://www.tddft.org/programs/APE/sites/default/files/ape-2.2.1.tar.gz" - version('2.2.1', 'ab81da85bd749c0c136af088c7f9ad58') + version('2.2.1', sha256='1bdb7f987fde81f8a5f335da6b59fa884e6d185d4a0995c90fde7c04376ce9e3') depends_on('gsl') depends_on('libxc@:2.2.2') diff --git a/var/spack/repos/builtin/packages/archer/package.py b/var/spack/repos/builtin/packages/archer/package.py index 78ff54e874..7437a3890d 100644 --- a/var/spack/repos/builtin/packages/archer/package.py +++ b/var/spack/repos/builtin/packages/archer/package.py @@ -13,7 +13,7 @@ class Archer(CMakePackage): homepage = "https://github.com/PRUNERS/ARCHER" url = "https://github.com/PRUNERS/archer/archive/v1.0.0.tar.gz" - version('1.0.0', '790bfaf00b9f57490eb609ecabfe954a') + version('1.0.0', sha256='df814a475606b83c659932caa30a68bed1c62e713386b375c1b78eb8d60e0d15') depends_on('cmake@3.4.3:', type='build') depends_on('llvm') diff --git a/var/spack/repos/builtin/packages/astra/package.py b/var/spack/repos/builtin/packages/astra/package.py index 13a912dcbb..c51d069455 100644 --- a/var/spack/repos/builtin/packages/astra/package.py +++ b/var/spack/repos/builtin/packages/astra/package.py @@ -11,7 +11,7 @@ class Astra(Package): homepage = "http://www.desy.de/~mpyflo/" - version('2016-11-30', '17135b7a4adbacc1843a50a6a2ae2c25', expand=False, + version('2016-11-30', sha256='50738bf924724e2dd15f1d924b290ffb0f7c703e5d5ae02ffee2db554338801e', expand=False, url='http://www.desy.de/~mpyflo/Astra_for_64_Bit_Linux/Astra') def install(self, spec, prefix): diff --git a/var/spack/repos/builtin/packages/converge/package.py b/var/spack/repos/builtin/packages/converge/package.py index 792bbedeb8..3b990ebd6a 100644 --- a/var/spack/repos/builtin/packages/converge/package.py +++ b/var/spack/repos/builtin/packages/converge/package.py @@ -27,13 +27,13 @@ class Converge(Package): # In order to view available versions, you need to register for an account: # https://download.convergecfd.com/wp-login.php?action=register - version('2.4.10', '53f5bd4bfb39005bebae46b8d6ee3ce6') - version('2.3.23', '2913c3e440f82db069051f8822115e5e') - version('2.2.0', 'd949cfe338c83ee736ca0be8f77df6bf', + version('2.4.10', sha256='5d3c39894598d2395149cfcc653af13b8b1091177290edd62fcf22c7e830d410') + version('2.3.23', sha256='1217d16eaf9d263f917ee468778508bad9dacb7e4397a293cfa6467f39fb4c52') + version('2.2.0', sha256='3885acbaf352c718ea69f0206c858a01be02f0928ffee738e4aceb1dd939a77a', url="https://download.convergecfd.com/download/CONVERGE_2.2/Full_Solver_Packages/converge_install_2.2.0_042916.tar.gz") - version('2.1.0', '327a917d46aa3bc8dee9511375ce112c', + version('2.1.0', sha256='6b8896d42cf7b9013cae5456f4dc118306a5bd271d4a15945ceb7dae913e825a', url="https://download.convergecfd.com/download/CONVERGE_2.1/Full_Solver_Packages/converge_install_2.1.0_111615.tar.gz") - version('2.0.0', '06f017521c3abc1a922b136e83d606dd', + version('2.0.0', sha256='f32c4824eb33724d85e283481d67ebd0630b1406011c528d775028bb2546f34e', url="https://download.convergecfd.com/download/CONVERGE_2.0/Full_Solver_Packages/converge_install_2.0.0_090214.tar.gz") variant('mpi', default=True, description='Build with MPI support') diff --git a/var/spack/repos/builtin/packages/cppad/package.py b/var/spack/repos/builtin/packages/cppad/package.py index 51ae4c0154..de6b4a5c23 100644 --- a/var/spack/repos/builtin/packages/cppad/package.py +++ b/var/spack/repos/builtin/packages/cppad/package.py @@ -14,7 +14,7 @@ class Cppad(CMakePackage): git = "https://github.com/coin-or/CppAD.git" version('develop', branch='master') - version('20170114', '565a534dc813fa1289764222cd8c11ea') + version('20170114', sha256='fa3980a882be2a668a7522146273a1b4f1d8dabe66ad4aafa8964c8c1fd6f957') def cmake_args(self): # This package does not obey CMAKE_INSTALL_PREFIX diff --git a/var/spack/repos/builtin/packages/cpprestsdk/package.py b/var/spack/repos/builtin/packages/cpprestsdk/package.py index 86b24761a1..a4f4a73817 100644 --- a/var/spack/repos/builtin/packages/cpprestsdk/package.py +++ b/var/spack/repos/builtin/packages/cpprestsdk/package.py @@ -15,7 +15,7 @@ class Cpprestsdk(CMakePackage): homepage = "https://github.com/Microsoft/cpprestsdk" url = "https://github.com/Microsoft/cpprestsdk/archive/v2.9.1.tar.gz" - version('2.9.1', 'c3dd67d8cde8a65c2e994e2ede4439a2') + version('2.9.1', sha256='537358760acd782f4d2ed3a85d92247b4fc423aff9c85347dc31dbb0ab9bab16') depends_on('boost') diff --git a/var/spack/repos/builtin/packages/dislin/package.py b/var/spack/repos/builtin/packages/dislin/package.py index 53d0e901b2..cfdffeb9ba 100644 --- a/var/spack/repos/builtin/packages/dislin/package.py +++ b/var/spack/repos/builtin/packages/dislin/package.py @@ -14,8 +14,7 @@ class Dislin(Package): homepage = "http://www.mps.mpg.de/dislin" url = "ftp://ftp.gwdg.de/pub/grafik/dislin/linux/i586_64/dislin-11.0.linux.i586_64.tar.gz" - version('11.1.linux.i586_64', '34218c257efedaf706f058bdf111ce9d') - version('11.0.linux.i586_64', '6fb099b54f41db009cafc702eebb5bc6') + version('11.2.linux.i586_64', sha256='13d28188924e0b0b803d72aa4b48be4067e98e890701b0aa6f54a11c7d34dd10') depends_on('motif') depends_on('gl') diff --git a/var/spack/repos/builtin/packages/fenics/package.py b/var/spack/repos/builtin/packages/fenics/package.py index 97020e857f..896edb583b 100644 --- a/var/spack/repos/builtin/packages/fenics/package.py +++ b/var/spack/repos/builtin/packages/fenics/package.py @@ -102,16 +102,6 @@ class Fenics(CMakePackage): 'ufl': 'c75c4781e5104504f158cb42cd87aceffa9052e8e9db6e9764e6a5b6115d7f73', } }, - { - 'version': '1.5.0', - 'sha256': '9b589a3534299a5e6d22c13c5eb30bb8', - 'resources': { - 'ffc': '755be60597d66f13c1e113739e7b9b620ee4271e0f7cc1053553a568bc08e7f4', - 'fiat': '2b053fa9f70399f8903b987f98a4fa2b06df9559c07c1d5f0b2b5e43c51de670', - 'instant': '36e042de26d97f5e3d43f2f52544d91ba0f14e1c73c7d07ed7804030b43d935d', - 'ufl': '2879a5b0937502676fa55765bcb8237ff78e8b70995a118ffe1de042b20e491b', - } - }, ] for release in releases: diff --git a/var/spack/repos/builtin/packages/fimpute/package.py b/var/spack/repos/builtin/packages/fimpute/package.py index 6d79f22079..7ee5f361f6 100644 --- a/var/spack/repos/builtin/packages/fimpute/package.py +++ b/var/spack/repos/builtin/packages/fimpute/package.py @@ -14,7 +14,7 @@ class Fimpute(Package): homepage = "http://www.aps.uoguelph.ca/~msargol/fimpute/" url = "http://www.aps.uoguelph.ca/~msargol/fimpute/FImpute_Linux.zip" - version('2014-01', 'df934a25c76dabef7d7afcb5b8058d98') + version('2014-01', sha256='aecda2dfdd4e3ef6f2331cc1d479e6f297f722fcdca455ca05bb047405534461') def install(self, spec, prefix): mkdirp(prefix.bin) diff --git a/var/spack/repos/builtin/packages/fseq/package.py b/var/spack/repos/builtin/packages/fseq/package.py index e3fd92d946..4858114ef0 100644 --- a/var/spack/repos/builtin/packages/fseq/package.py +++ b/var/spack/repos/builtin/packages/fseq/package.py @@ -10,9 +10,9 @@ class Fseq(Package): """F-Seq: A Feature Density Estimator for High-Throughput Sequence Tags""" homepage = "http://fureylab.web.unc.edu/software/fseq/" - url = "http://fureylab.med.unc.edu/fseq/fseq_1.84.tgz" + url = "http://html-large-files-dept-fureylab.cloudapps.unc.edu/fureylabfiles/fseq/fseq_1.84.tgz" - version('1.84', 'f9124ad0f45c60f3a7eb74dde8c945b9') + version('1.84', sha256='22d603a51f127cb86cdecde9aeae14d273bb98bcd2b47724763ab3b3241a6e68') depends_on('java', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/gnu-prolog/package.py b/var/spack/repos/builtin/packages/gnu-prolog/package.py index b0ea5ed293..d332711077 100644 --- a/var/spack/repos/builtin/packages/gnu-prolog/package.py +++ b/var/spack/repos/builtin/packages/gnu-prolog/package.py @@ -9,9 +9,9 @@ from spack import * class GnuProlog(Package): """A free Prolog compiler with constraint solving over finite domains.""" homepage = "http://www.gprolog.org/" - url = "http://www.gprolog.org/gprolog-1.4.4.tar.gz" + url = "http://www.gprolog.org/gprolog-1.4.5.tar.gz" - version('1.4.4', '37009da471e5217ff637ad1c516448c8') + version('1.4.5', sha256='bfdcf00e051e0628b4f9af9d6638d4fde6ad793401e58a5619d1cc6105618c7c') parallel = False diff --git a/var/spack/repos/builtin/packages/h5hut/package.py b/var/spack/repos/builtin/packages/h5hut/package.py index ec7b441b8f..48c5fa2020 100644 --- a/var/spack/repos/builtin/packages/h5hut/package.py +++ b/var/spack/repos/builtin/packages/h5hut/package.py @@ -12,9 +12,9 @@ class H5hut(AutotoolsPackage): High-Performance I/O Library for Particle-based Simulations.""" homepage = "https://amas.psi.ch/H5hut/" - url = "https://amas.psi.ch/H5hut/raw-attachment/wiki/DownloadSources/H5hut-1.99.13.tar.gz" + url = "http://amas.web.psi.ch/Downloads/H5hut/H5hut-2.0.0rc3.tar.gz" - version('1.99.13', '2a07a449afe50534de006ac6954a421a') + version('2.0.0rc3', sha256='1ca9a9478a99e1811ecbca3c02cc49258050d339ffb1a170006eab4ab2a01790') variant('fortran', default=True, description='Enable Fortran support') variant('mpi', default=True, description='Enable MPI support') diff --git a/var/spack/repos/builtin/packages/hadoop/package.py b/var/spack/repos/builtin/packages/hadoop/package.py index 8c51c228a6..04b00e0a85 100644 --- a/var/spack/repos/builtin/packages/hadoop/package.py +++ b/var/spack/repos/builtin/packages/hadoop/package.py @@ -13,10 +13,9 @@ class Hadoop(Package): """ homepage = "http://hadoop.apache.org/" - url = "http://mirrors.ocf.berkeley.edu/apache/hadoop/common/hadoop-3.1.1/hadoop-3.1.1.tar.gz" + url = "http://apache-mirror.8birdsvideo.com/hadoop/common/hadoop-3.1.2/hadoop-3.1.2-src.tar.gz" - version('3.1.1', '0b6ab06b59ae75f433de387783f19011') - version('2.9.0', 'b443ead81aa2bd5086f99e62e66a8f64') + version('3.1.2', sha256='02f277c9fc75d4b13c7697ed6be30dba41667841ab5e37442855267c39bec6b6') depends_on('java', type='run') diff --git a/var/spack/repos/builtin/packages/harminv/package.py b/var/spack/repos/builtin/packages/harminv/package.py index 1776f4de2d..3570f87fe1 100644 --- a/var/spack/repos/builtin/packages/harminv/package.py +++ b/var/spack/repos/builtin/packages/harminv/package.py @@ -17,7 +17,7 @@ class Harminv(AutotoolsPackage): url = "http://ab-initio.mit.edu/harminv/harminv-1.4.tar.gz" list_url = "http://ab-initio.mit.edu/harminv/old" - version('1.4', 'b95e24a9bc7e07d3d2202d1605e9e86f') + version('1.4', sha256='e1b923c508a565f230aac04e3feea23b888b47d8e19b08816a97ee4444233670') depends_on('blas') depends_on('lapack') diff --git a/var/spack/repos/builtin/packages/hpx5/package.py b/var/spack/repos/builtin/packages/hpx5/package.py index 762d4d469d..5ea3937c46 100644 --- a/var/spack/repos/builtin/packages/hpx5/package.py +++ b/var/spack/repos/builtin/packages/hpx5/package.py @@ -18,16 +18,15 @@ class Hpx5(AutotoolsPackage): applications enabling scientists to write code that performs and scales better than contemporary runtimes.""" homepage = "http://hpx.crest.iu.edu" - url = "http://hpx.crest.iu.edu/release/hpx-3.1.0.tar.gz" - - version('4.1.0', '43cb78758506f77416b95276a472f84f') - version('4.0.0', 'b40dc03449ae1039cbb48ee149952b22') - version('3.1.0', '9e90b8ac46788c009079632828c77628') - version('2.0.0', '3d2ff3aab6c46481f9ec65c5b2bfe7a6') - version('1.3.0', '2260ecc7f850e71a4d365a43017d8cee') - version('1.2.0', '4972005f85566af4afe8b71afbf1480f') - version('1.1.0', '646afb460ecb7e0eea713a634933ce4f') - version('1.0.0', '8020822adf6090bd59ed7fe465f6c6cb') + url = "https://github.com/adk9/hpx5/archive/v3.1.0.tar.gz" + + version('4.1.0', sha256='3f01009f5e517c8dfca266dabb49894d688db5adce09608fb1c877263605a9f8') + version('4.0.0', sha256='e35b1161566a65ffbd875c1413ea97a84be0c7b528a3dee99f5e250b2aecbd19') + version('3.1.0', sha256='359d457a26b87abb415605911d791ce0ff6edbb064bc40b0f830960f8f612b84') + version('3.0.0', sha256='10f14ba198a32787cee05962e346bafb922f74a5135fb09a1ba8c32a1e942800') + version('2.2.0', sha256='e34c7513a287d517e67cce5aa3011474c48718e7860c3860ba1290c702be28a8') + version('2.1.0', sha256='675826f669eeb3eab40947715af8c8495e2b3d299223372431dc01c1f7d5d616') + version('2.0.0', sha256='0278728557b6684aeb86228f44d548ac809302f05a0b9c8b433cdd157629e384') # Don't second-guess what compiler we are using on Cray patch("configure.patch", when='@4.0.0') diff --git a/var/spack/repos/builtin/packages/hstr/package.py b/var/spack/repos/builtin/packages/hstr/package.py index b3669e0921..1a933f22fb 100644 --- a/var/spack/repos/builtin/packages/hstr/package.py +++ b/var/spack/repos/builtin/packages/hstr/package.py @@ -14,7 +14,7 @@ class Hstr(AutotoolsPackage): homepage = "https://github.com/dvorka/hstr" url = "https://github.com/dvorka/hstr/archive/1.22.tar.gz" - version('1.22', '620dab922fadf2858938fbe36d9f99fd') + version('1.22', sha256='384fee04e4c80a1964dcf443131c1da4a20dd474fb48132a51d3de0a946ba996') depends_on('autoconf', type='build') depends_on('automake', type='build') diff --git a/var/spack/repos/builtin/packages/libbeato/package.py b/var/spack/repos/builtin/packages/libbeato/package.py index 8c6db5eb77..58fde449ea 100644 --- a/var/spack/repos/builtin/packages/libbeato/package.py +++ b/var/spack/repos/builtin/packages/libbeato/package.py @@ -12,6 +12,6 @@ class Libbeato(AutotoolsPackage): from UCSC's Genome Browser Group.""" homepage = "https://github.com/CRG-Barcelona/libbeato" - url = "https://github.com/CRG-Barcelona/libbeato/archive/master.tar.gz" + git = "https://github.com/CRG-Barcelona/libbeato.git" - version('master', 'ee6f0f0f3f09c4f601fcfed3b13e7395') + version('master', brancch='master') diff --git a/var/spack/repos/builtin/packages/lsof/package.py b/var/spack/repos/builtin/packages/lsof/package.py index a65c0503f6..8bc2c8897a 100644 --- a/var/spack/repos/builtin/packages/lsof/package.py +++ b/var/spack/repos/builtin/packages/lsof/package.py @@ -12,7 +12,7 @@ class Lsof(Package): homepage = "https://people.freebsd.org/~abe/" url = "https://www.mirrorservice.org/sites/lsof.itap.purdue.edu/pub/tools/unix/lsof/lsof_4.89.tar.gz" - version('4.89', '8afbaff3ee308edc130bdc5df0801c8f') + version('4.89', sha256='ff4ac555966b587f06338475c8fcc0f41402b4c8e970e730f6f83b62be8b5c0d') def install(self, spec, prefix): tar = which('tar') diff --git a/var/spack/repos/builtin/packages/nektar/package.py b/var/spack/repos/builtin/packages/nektar/package.py index 86e929ead5..d2cc96d92b 100644 --- a/var/spack/repos/builtin/packages/nektar/package.py +++ b/var/spack/repos/builtin/packages/nektar/package.py @@ -12,7 +12,7 @@ class Nektar(CMakePackage): homepage = "https://www.nektar.info/" url = "https://gitlab.nektar.info/nektar/nektar/-/archive/v4.4.1/nektar-v4.4.1.tar.bz2" - version('4.4.1', '1be7d061c3cafd9a0f1eb8d281d99b89') + version('4.4.1', sha256='71cfd93d848a751ae9ae5e5ba336cee4b4827d4abcd56f6b8dc5c460ed6b738c') variant('mpi', default=True, description='Builds with mpi support') variant('fftw', default=True, description='Builds with fftw support') diff --git a/var/spack/repos/builtin/packages/ocaml/package.py b/var/spack/repos/builtin/packages/ocaml/package.py index 73a64f861c..e3d3cb9c83 100644 --- a/var/spack/repos/builtin/packages/ocaml/package.py +++ b/var/spack/repos/builtin/packages/ocaml/package.py @@ -11,10 +11,10 @@ class Ocaml(Package): functional, imperative and object-oriented styles""" homepage = "http://ocaml.org/" - url = "http://caml.inria.fr/pub/distrib/ocaml-4.03/ocaml-4.03.0.tar.gz" + url = "https://caml.inria.fr/pub/distrib/ocaml-4.06/ocaml-4.06.0.tar.gz" - version('4.06.0', '66e5439eb63dbb8b8224cba5d1b20947') - version('4.03.0', '43812739ea1b4641cf480f57f977c149') + version('4.06.0', sha256='c17578e243c4b889fe53a104d8927eb8749c7be2e6b622db8b3c7b386723bf50') + version('4.03.0', sha256='7fdf280cc6c0a2de4fc9891d0bf4633ea417046ece619f011fd44540fcfc8da2') depends_on('ncurses') diff --git a/var/spack/repos/builtin/packages/octopus/package.py b/var/spack/repos/builtin/packages/octopus/package.py index d6dc0a2402..4e7aa3322e 100644 --- a/var/spack/repos/builtin/packages/octopus/package.py +++ b/var/spack/repos/builtin/packages/octopus/package.py @@ -10,12 +10,12 @@ class Octopus(Package): """A real-space finite-difference (time-dependent) density-functional theory code.""" - homepage = "http://www.tddft.org/programs/octopus/" - url = "http://www.tddft.org/programs/octopus/down.php?file=6.0/octopus-6.0.tar.gz" + homepage = "https://octopus-code.org/" + url = "http://octopus-code.org/down.php?file=6.0/octopus-6.0.tar.gz" - version('7.3', '87e51fa4a3a999706ea4ea5e9136996f') - version('6.0', '5d1168c2a8d7fd9cb9492eaebaa7182e') - version('5.0.1', '2b6392ab67b843f9d4ca7413fc07e822') + version('7.3', sha256='ad843d49d4beeed63e8b9a2ca6bfb2f4c5a421f13a4f66dc7b02f6d6a5c4d742') + version('6.0', sha256='4a802ee86c1e06846aa7fa317bd2216c6170871632c9e03d020d7970a08a8198') + version('5.0.1', sha256='3423049729e03f25512b1b315d9d62691cd0a6bd2722c7373a61d51bfbee14e0') variant('scalapack', default=False, description='Compile with Scalapack') diff --git a/var/spack/repos/builtin/packages/openmc/package.py b/var/spack/repos/builtin/packages/openmc/package.py index 247e6fe86d..5627ac0dc6 100644 --- a/var/spack/repos/builtin/packages/openmc/package.py +++ b/var/spack/repos/builtin/packages/openmc/package.py @@ -18,7 +18,7 @@ class Openmc(CMakePackage): url = "https://github.com/openmc-dev/openmc/tarball/v0.10.0" git = "https://github.com/openmc-dev/openmc.git" - version('0.10.0', 'abb57bd1b226eb96909dafeec31369b0') + version('0.10.0', sha256='47650cb45e2c326ae439208d6f137d75ad3e5c657055912d989592c6e216178f') version('develop') depends_on("hdf5+hl") diff --git a/var/spack/repos/builtin/packages/parmgridgen/package.py b/var/spack/repos/builtin/packages/parmgridgen/package.py index 457770edb2..74305fc907 100644 --- a/var/spack/repos/builtin/packages/parmgridgen/package.py +++ b/var/spack/repos/builtin/packages/parmgridgen/package.py @@ -16,9 +16,9 @@ class Parmgridgen(Package): """ homepage = "http://www-users.cs.umn.edu/~moulitsa/software.html" - url = "http://www-users.cs.umn.edu/~moulitsa/download/ParMGridGen-1.0.tar.gz" + url = "http://www.stasyan.com/devel/distfiles/ParMGridGen-1.0.tar.gz" - version('1.0', '2872fa95b7fb91d6bd525490eed62038') + version('1.0', sha256='62cdb6e48cfc59124e5d5d360c2841e0fc2feecafe65bda110b74e942740b395') variant('mpi', default=True, description='Activate the compilation of parallel libraries') diff --git a/var/spack/repos/builtin/packages/pgi/package.py b/var/spack/repos/builtin/packages/pgi/package.py index b3c7bcbb23..c61611e22f 100644 --- a/var/spack/repos/builtin/packages/pgi/package.py +++ b/var/spack/repos/builtin/packages/pgi/package.py @@ -20,17 +20,12 @@ class Pgi(Package): homepage = "http://www.pgroup.com/" - version('19.4', sha256='23eee0d4da751dd6f247d624b68b03538ebd172e63a053c41bb67013f07cf68e') - version('19.1', sha256='3e05a6db2bf80b5d15f6ff83188f20cb89dc23e233417921e5c0822e7e57d34f') + version('19.4', sha256='23eee0d4da751dd6f247d624b68b03538ebd172e63a053c41bb67013f07cf68e') + version('19.1', sha256='3e05a6db2bf80b5d15f6ff83188f20cb89dc23e233417921e5c0822e7e57d34f') version('18.10', sha256='4b3ff83d2a13de6001bed599246eff8e63ef711b8952d4a9ee12efd666b3e326') - version('18.4', 'b55461f9f0986acbd51902c51c2074b9') - version('17.10', '85ad6506e7ada610ab11ddb35d697efa') - version('17.4', 'a311d2756ddda657860bad8e5725597b') - version('17.3', '6eefc42f85e756cbaba76467ed640902') - version('16.10', '9bb6bfb7b1052f9e6a45829ba7a24e47') - version('16.5', 'a40e8852071b5d600cb42f31631b3de1') - version('16.3', '618cb7ddbc57d4e4ed1f21a0ab25f427') - version('15.7', '84a689217b17cdaf78c39270c70bea5d') + version('18.4', sha256='81e0dcf6000b026093ece180d42d77854c23269fb8409cedcf51c674ca580a0f') + version('17.10', sha256='9da8f869fb9b70c0c4423c903d40a9e22d54b997af359a43573c0841165cd1b6') + version('17.4', sha256='115c212d526695fc116fe44f1e722793e60b6f7d1b341cd7e77a95da8e7f6c34') variant('network', default=True, description="Perform a network install") diff --git a/var/spack/repos/builtin/packages/porta/package.py b/var/spack/repos/builtin/packages/porta/package.py index fac5198ce8..d3bc8a466b 100644 --- a/var/spack/repos/builtin/packages/porta/package.py +++ b/var/spack/repos/builtin/packages/porta/package.py @@ -11,9 +11,9 @@ class Porta(Package): """PORTA is a collection of routines for analyzing polytopes and polyhedra""" homepage = "http://porta.zib.de" - url = "http://porta.zib.de/porta-1.4.1.tgz" + url = "http://porta.zib.de/porta-1.4.1.zip" - version('1.4.1', '585179bf19d214ed364663a5d17bd5fc') + version('1.4.1', sha256='21e3784f46f4f2154100a0c39cbd9211a26e513ffe0c9f70ab75a3bb2810b059') depends_on("libtool", type="build") diff --git a/var/spack/repos/builtin/packages/psi4/package.py b/var/spack/repos/builtin/packages/psi4/package.py index f9c422baab..be9d5046eb 100644 --- a/var/spack/repos/builtin/packages/psi4/package.py +++ b/var/spack/repos/builtin/packages/psi4/package.py @@ -13,9 +13,9 @@ class Psi4(CMakePackage): a variety of molecular properties.""" homepage = "http://www.psicode.org/" - url = "https://github.com/psi4/psi4/archive/0.5.tar.gz" + url = "https://github.com/psi4/psi4/archive/v1.3.2.tar.gz" - version('0.5', '53041b8a9be3958384171d0d22f9fdd0') + version('1.3.2', sha256='ed76c67803b6420f35f57a6dd31c47108b9145b8c9fced5c94cdc179f6b5fbf3') variant('build_type', default='Release', description='The build type to build', diff --git a/var/spack/repos/builtin/packages/pslib/package.py b/var/spack/repos/builtin/packages/pslib/package.py index 1be61a940b..7cb6601b2c 100644 --- a/var/spack/repos/builtin/packages/pslib/package.py +++ b/var/spack/repos/builtin/packages/pslib/package.py @@ -10,9 +10,9 @@ class Pslib(AutotoolsPackage): """C-library to create PostScript files on the fly.""" homepage = "http://pslib.sourceforge.net/" - url = "https://kent.dl.sourceforge.net/project/pslib/pslib/0.4.5/pslib-0.4.5.tar.gz" + url = "https://sourceforge.net/projects/pslib/files/pslib/0.4.5/pslib-0.4.5.tar.gz" - version('0.4.5', '03f39393628a6d758799b9f845047e27') + version('0.4.5', sha256='7a33928982b281660206bb3749a4a563e3ac987eea64f41696f212df345212be') depends_on('jpeg') depends_on('libpng') diff --git a/var/spack/repos/builtin/packages/pstreams/package.py b/var/spack/repos/builtin/packages/pstreams/package.py index 48ae581996..fc4bbff2d7 100644 --- a/var/spack/repos/builtin/packages/pstreams/package.py +++ b/var/spack/repos/builtin/packages/pstreams/package.py @@ -11,9 +11,9 @@ class Pstreams(Package): """C++ wrapper for the POSIX.2 functions popen(3) and pclose(3)""" homepage = "http://pstreams.sourceforge.net/" - url = "https://superb-sea2.dl.sourceforge.net/project/pstreams/pstreams/Release%201.0/pstreams-1.0.1.tar.gz" + url = "https://sourceforge.net/projects/pstreams/files/pstreams/Release%201.0/pstreams-1.0.1.tar.gz" - version('1.0.1', '23199e3d12a644a2a0c66ec889d4c064') + version('1.0.1', sha256='a5f1f2e014392cd0e2cdb508a429e11afe64140db05b7f0a83d7534faa1a9226') def install(self, spec, prefix): mkdirp(prefix.include) diff --git a/var/spack/repos/builtin/packages/py-opppy/package.py b/var/spack/repos/builtin/packages/py-opppy/package.py index a005332ab0..b6edea8226 100644 --- a/var/spack/repos/builtin/packages/py-opppy/package.py +++ b/var/spack/repos/builtin/packages/py-opppy/package.py @@ -16,7 +16,7 @@ class PyOpppy(PythonPackage): git = "https://github.com/lanl/opppy.git" version('master', branch='master') - version('0.1.1', '852a1329ce68d678623beed3fd01ea98') + version('0_1_1', sha256='505c023853e75552abc65de9777a125ecb6a99a1cb4e605a4f702af837e3168b') depends_on('py-setuptools', type=('build', 'run')) depends_on('py-numpy@1.6:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-perf/package.py b/var/spack/repos/builtin/packages/py-perf/package.py index 211479fb94..2d2c025691 100644 --- a/var/spack/repos/builtin/packages/py-perf/package.py +++ b/var/spack/repos/builtin/packages/py-perf/package.py @@ -11,10 +11,10 @@ class PyPerf(PythonPackage): analyze benchmarks. """ - homepage = "https://pypi.python.org/pypi/perf" - url = "https://github.com/vstinner/perf/archive/1.5.1.tar.gz" + homepage = "https://pypi.python.org/pypi/pyperf" + url = "https://github.com/vstinner/pyperf/archive/1.5.1.tar.gz" - version('1.5.1', 'e3dc532fdbaf44f2d921556164bd74e5') + version('1.5.1', sha256='9c271862bc2911be8eb01031a4a86cbc3f5bb615971514383802d3dcf46f18ed') depends_on('py-setuptools', type='build') depends_on('py-six', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-performance/package.py b/var/spack/repos/builtin/packages/py-performance/package.py index 3d07e1562b..9abc3c4d48 100644 --- a/var/spack/repos/builtin/packages/py-performance/package.py +++ b/var/spack/repos/builtin/packages/py-performance/package.py @@ -17,8 +17,8 @@ class PyPerformance(PythonPackage): homepage = 'http://pyperformance.readthedocs.io/' url = 'https://github.com/python/performance/archive/0.6.1.tar.gz' - version('0.6.1', '95477b584a284582b66c922a5335b427') - version('0.6.0', 'b93661e07668fa0b461236dca164eedf') + version('0.6.1', sha256='cc48dd7579da2f4b0e4cff0c8220811f5ba7019493bb408819c1532acf53d13a') + version('0.6.0', sha256='4636e276445e96563f628e071cacd5df31dc587d83899e7d03fa8b31760f2cd2') depends_on('py-setuptools', type=('build', 'run')) depends_on('py-six', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-tomopy/package.py b/var/spack/repos/builtin/packages/py-tomopy/package.py index 93a82bf0e9..b838561efd 100644 --- a/var/spack/repos/builtin/packages/py-tomopy/package.py +++ b/var/spack/repos/builtin/packages/py-tomopy/package.py @@ -19,7 +19,7 @@ class PyTomopy(PythonPackage): 'tomopy.prep', 'tomopy.misc', 'tomopy.io', 'doc.demo' ] - version('1.0.0', '986ac2c85a4af9ada0403b4c746d2cd4') + version('1.0.0', sha256='ee45f7a062e5a66d6f18a904d2e204e48d85a1ce1464156f9e2f6353057dfe4c') depends_on('py-setuptools', type='build') depends_on('py-numpy', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-udunits/package.py b/var/spack/repos/builtin/packages/py-udunits/package.py index f0f37ff051..b7fb343439 100644 --- a/var/spack/repos/builtin/packages/py-udunits/package.py +++ b/var/spack/repos/builtin/packages/py-udunits/package.py @@ -12,7 +12,7 @@ class PyUdunits(PythonPackage): homepage = "https://github.com/SciTools/cf_units" url = "https://github.com/SciTools/cf_units/archive/v1.1.3.tar.gz" - version('1.1.3', '61ea2239c87b4c1d5d30147800a9e750') + version('1.1.3', sha256='cc27f4f06c99d242c36beb8dc5c517e1b1124a8c65ca3f76f372b9674aa320ba') maintainers = ['citibeth'] diff --git a/var/spack/repos/builtin/packages/r-abadata/package.py b/var/spack/repos/builtin/packages/r-abadata/package.py index 8c79dce6c5..2f4f6f1ebc 100644 --- a/var/spack/repos/builtin/packages/r-abadata/package.py +++ b/var/spack/repos/builtin/packages/r-abadata/package.py @@ -17,6 +17,6 @@ class RAbadata(RPackage): All datasets are restricted to protein coding genes.""" homepage = "https://bioconductor.org/packages/ABAData/" - url = "https://bioconductor.org/packages/release/data/experiment/src/contrib/ABAData_1.6.0.tar.gz" + url = "https://bioconductor.org/packages/release/data/experiment/src/contrib/ABAData_1.14.0.tar.gz" - version('1.6.0', '9adfb9fbb39ad05cf72852a229476fb7') + version('1.14.0', sha256='d203d968044c292cdfab57a4d6bf52dfb60470bd78b4c9bd88892577ac42b2b7') diff --git a/var/spack/repos/builtin/packages/r-acde/package.py b/var/spack/repos/builtin/packages/r-acde/package.py index 107c7937bc..4b49104897 100644 --- a/var/spack/repos/builtin/packages/r-acde/package.py +++ b/var/spack/repos/builtin/packages/r-acde/package.py @@ -20,8 +20,8 @@ class RAcde(RPackage): (2015, pending publication).""" homepage = "https://www.bioconductor.org/packages/acde/" - url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/acde_1.6.0.tar.gz" + url = "https://bioconductor.org/packages/release/bioc/src/contrib/acde_1.14.0.tar.gz" - version('1.6.0', 'e92ce91f75bab3bb1d79995bec1b42cc') + version('1.14.0', sha256='e8d9ad688610d4b72cab729141dc46fce580c97128d929885336bb138345b788') depends_on('r-boot', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-affydata/package.py b/var/spack/repos/builtin/packages/r-affydata/package.py index a310286ef7..c5bcc2c329 100644 --- a/var/spack/repos/builtin/packages/r-affydata/package.py +++ b/var/spack/repos/builtin/packages/r-affydata/package.py @@ -12,9 +12,9 @@ class RAffydata(RPackage): package affy.""" homepage = "https://www.bioconductor.org/packages/affydata/" - url = "https://www.bioconductor.org/packages/release/data/experiment/src/contrib/affydata_1.24.0.tar.gz" + url = "https://www.bioconductor.org/packages/release/data/experiment/src/contrib/affydata_1.32.0.tar.gz" - version('1.24.0', '0b6938685c450a56d65dd5628ebed42d') + version('1.32.0', sha256='059e05a2b8908720801d684d5617d5d5e45db7a5999c5659a22daf87658538d1') depends_on('r@3.4.0:3.4.9', when=('@1.24.0')) depends_on('r-affy', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/raft/package.py b/var/spack/repos/builtin/packages/raft/package.py index f8426c663a..fda2e02a50 100644 --- a/var/spack/repos/builtin/packages/raft/package.py +++ b/var/spack/repos/builtin/packages/raft/package.py @@ -16,7 +16,7 @@ class Raft(CMakePackage): git = "https://bitbucket.org/gill_martinez/raft_aps.git" version('develop', branch='master') - version('1.2.3', '4d1b106d9b3493e63dde96f7dd44b834') + version('1.2.3', sha256='c41630e74491c8db272dcf4707e9b11cdcb226c0b7e978ca6eba8006f47bdae6') depends_on('mpi') depends_on('cmake', type='build') diff --git a/var/spack/repos/builtin/packages/snpeff/package.py b/var/spack/repos/builtin/packages/snpeff/package.py index c9e8e1dcd5..d0c60c586e 100644 --- a/var/spack/repos/builtin/packages/snpeff/package.py +++ b/var/spack/repos/builtin/packages/snpeff/package.py @@ -13,9 +13,9 @@ class Snpeff(Package): amino acid changes).""" homepage = "http://snpeff.sourceforge.net/" - url = "https://kent.dl.sourceforge.net/project/snpeff/snpEff_latest_core.zip" + url = "https://downloads.sourceforge.net/project/snpeff/snpEff_latest_core.zip" - version('2017-11-24', '1fa84a703580a423e27f1e14a945901c') + version('2017-11-24', sha256='d55a7389a78312947c1e7dadf5e6897b42d3c6e942e7c1b8ec68bb35d2ae2244') depends_on('jdk', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/stress/package.py b/var/spack/repos/builtin/packages/stress/package.py index 6531962011..93cb340220 100644 --- a/var/spack/repos/builtin/packages/stress/package.py +++ b/var/spack/repos/builtin/packages/stress/package.py @@ -12,7 +12,9 @@ class Stress(AutotoolsPackage): the system. It is written in C, and is free software licensed under the GPLv2.""" - homepage = "https://people.seas.harvard.edu/~apw/stress/" - url = "https://people.seas.harvard.edu/~apw/stress/stress-1.0.4.tar.gz" + # Moved from original homepage + # homepage = "https://people.seas.harvard.edu/~apw/stress/" + homepage = "https://github.com/javiroman/system-stress" + url = "https://github.com/javiroman/system-stress/archive/v1.0.4.tar.gz" - version('1.0.4', '890a4236dd1656792f3ef9a190cf99ef') + version('1.0.4', sha256='b03dbb9664d7f8dcb3eadc918c2e8eb822f5a3ba47d9bd51246540bac281bd75') diff --git a/var/spack/repos/builtin/packages/xdmf3/package.py b/var/spack/repos/builtin/packages/xdmf3/package.py index c14560816f..772135846c 100644 --- a/var/spack/repos/builtin/packages/xdmf3/package.py +++ b/var/spack/repos/builtin/packages/xdmf3/package.py @@ -18,7 +18,7 @@ class Xdmf3(CMakePackage): # There is no official release of XDMF and development has largely ceased, # but the current version, 3.x, is maintained on the master branch. - version('2019-01-14', '8d9c98081d89ac77a132d56bc8bef53581db4078') + version('2019-01-14', commit='8d9c98081d89ac77a132d56bc8bef53581db4078') variant('shared', default=True, description='Enable shared libraries') variant('mpi', default=True, description='Enable MPI') diff --git a/var/spack/repos/builtin/packages/yorick/package.py b/var/spack/repos/builtin/packages/yorick/package.py index 59cc2751cf..caffcfa11d 100644 --- a/var/spack/repos/builtin/packages/yorick/package.py +++ b/var/spack/repos/builtin/packages/yorick/package.py @@ -22,7 +22,7 @@ class Yorick(Package): git = "https://github.com/dhmunro/yorick.git" version('master', branch='master') - version('2.2.04', '1b5b0da6ad81b2d9dba64d991ec17939') + version('2.2.04', sha256='4a4f3a18aed533cc5fadbb3d4bafb48f04834a22cbff6ad5c19d9dba74facbda') version('f90-plugin', branch='f90-plugin') variant('X', default=False, description='Enable X11 support') -- cgit v1.2.3-70-g09d2