From 900bd2f477b618620b2c776b91a2e57d0e4555f7 Mon Sep 17 00:00:00 2001 From: George Young Date: Tue, 21 May 2024 02:08:57 +0100 Subject: seqkit: add 2.4.0, switching to 'go build' install mechanic (#38192) * seqkit: add 2.4.0 * seqkit: add 2.4.0, switching to 'go build' install mechanic * seqkit: add 2.4.0, switching to 'go build' install mechanic * seqkit: update to @2.6.1, drop deprecated version and build system * seqkit: add @2.7.0, convert to GoPackage * tidying * tidying --------- Co-authored-by: LMS Bioinformatics --- var/spack/repos/builtin/packages/seqkit/package.py | 28 +++++++++++++--------- 1 file changed, 17 insertions(+), 11 deletions(-) diff --git a/var/spack/repos/builtin/packages/seqkit/package.py b/var/spack/repos/builtin/packages/seqkit/package.py index 05a2d6ed00..238e3e735c 100644 --- a/var/spack/repos/builtin/packages/seqkit/package.py +++ b/var/spack/repos/builtin/packages/seqkit/package.py @@ -6,17 +6,23 @@ from spack.package import * -class Seqkit(Package): - """A cross-platform and ultrafast toolkit for FASTA/Q file manipulation - in Golang.""" +class GoBuilder(spack.build_systems.go.GoBuilder): + @property + def build_directory(self): + return join_path(self.pkg.stage.source_path, "seqkit") - homepage = "https://bioinf.shenwei.me/seqkit" - url = ( - "https://github.com/shenwei356/seqkit/releases/download/v0.10.1/seqkit_linux_amd64.tar.gz" - ) - version("0.10.1", sha256="82f1c86dc4bd196403a56c2bf3ec063e5674a71777e68d940c4cc3d8411d2e9d") +class Seqkit(GoPackage): + """seqkit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation""" - def install(self, spec, prefix): - mkdir(prefix.bin) - install("seqkit", prefix.bin) + homepage = "https://bioinf.shenwei.me/seqkit/" + url = "https://github.com/shenwei356/seqkit/archive/refs/tags/v2.4.0.tar.gz" + + license("MIT", checked_by="A-N-Other") + + version("2.7.0", sha256="b5c723ffd4640659860fc70a71c218d8f53bea0eae571cecc98eff04c7291e02") + version("2.6.1", sha256="d88249bd3b630c908ebd308abaa9cd7acb7a781c12bab877d3daaab56f43c443") + version("2.5.1", sha256="76d105921f918be20e616fbb607fe0fb2db603535a254ec0f853cb36bef817da") + version("2.4.0", sha256="c319f3d5feb7c99309e654042432959f01bbc5f7e4c71f55dc9854df46c73c7f") + + depends_on("go@1.17:", type="build") -- cgit v1.2.3-70-g09d2