From 90b34c96d6a255489ccc03c62f64c191130a32ac Mon Sep 17 00:00:00 2001 From: lingnanyuan <1297162327@qq.com> Date: Mon, 17 Dec 2018 12:34:16 -0600 Subject: mark: Create new package. (#7069) * mark: Create new package. * mark: change description. * mark: change description. * mark: Delete set_up environment. * mark: replace join_path(prefix.bin, mark) with prefix.bin.mark --- var/spack/repos/builtin/packages/mark/package.py | 53 ++++++++++++++++++++++++ 1 file changed, 53 insertions(+) create mode 100644 var/spack/repos/builtin/packages/mark/package.py diff --git a/var/spack/repos/builtin/packages/mark/package.py b/var/spack/repos/builtin/packages/mark/package.py new file mode 100644 index 0000000000..60532666c1 --- /dev/null +++ b/var/spack/repos/builtin/packages/mark/package.py @@ -0,0 +1,53 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import os + + +class Mark(Package): + """Program MARK, developed and maintained by Gary White (Colorado State + University) is the most flexible, widely used application currently + available for parameter estimation using data from marked individuals. + + You will need to download the package yourself, unzip, rename it + following the guide in http://www.phidot.org/software/mark/rmark/linux/ + Step(1). Spack will search your current directory for the download file. + Alternatively, add this file to a mirror so that Spack can find it. + For instructions on how to set up a mirror, see + http://spack.readthedocs.io/en/latest/mirrors.html""" + + homepage = "http://www.phidot.org/software/mark/index.html" + + version('1.0', '64f2fb0837c38d6e41c7546b25627146', expand=False) + + def url_for_version(self, version): + return "file://{0}/mark".format(os.getcwd()) + + def install(self, spec, prefix): + mkdir(prefix.bin) + install('mark', prefix.bin) + + chmod = which('chmod') + chmod('+x', prefix.bin.mark) -- cgit v1.2.3-60-g2f50