From 90dce26db9cd12506fd7d3ec6147e5490b338719 Mon Sep 17 00:00:00 2001 From: Justin Stanley Date: Sat, 22 Dec 2018 12:09:20 -0600 Subject: r-corhmm: new package at 1.22 (#9859) --- .../repos/builtin/packages/r-corhmm/package.py | 31 ++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-corhmm/package.py diff --git a/var/spack/repos/builtin/packages/r-corhmm/package.py b/var/spack/repos/builtin/packages/r-corhmm/package.py new file mode 100644 index 0000000000..e59264d11d --- /dev/null +++ b/var/spack/repos/builtin/packages/r-corhmm/package.py @@ -0,0 +1,31 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RCorhmm(RPackage): + """corHMM: Analysis of Binary Character Evolution + + Fits a hidden rates model that allows different transition rate classes + on different portions of a phylogeny by treating rate classes as hidden + states in a Markov process and various other functions for evaluating + models of binary character evolution.""" + + homepage = "https://cran.r-project.org/package=corHMM" + url = "https://cran.r-project.org/src/contrib/corHMM_1.22.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/corHMM/" + + version('1.22', sha256='d262fa1183eab32087afb70f1789fabae6fb49bec01d627974c54a088a48b10d') + + depends_on('r-ape', type=('build', 'run')) + depends_on('r-nloptr', type=('build', 'run')) + depends_on('r-gensa', type=('build', 'run')) + depends_on('r-expm', type=('build', 'run')) + depends_on('r-numderiv', type=('build', 'run')) + depends_on('r-nnet', type=('build', 'run')) + depends_on('r-corpcor', type=('build', 'run')) + depends_on('r-phangorn', type=('build', 'run')) + depends_on('r-rmpfr', type=('build', 'run')) -- cgit v1.2.3-70-g09d2