From 95e63e0c29f2ca660354e75783bb62a39e0cd49e Mon Sep 17 00:00:00 2001 From: Desmond Orton Date: Mon, 11 Oct 2021 14:28:34 -0500 Subject: New Package Qualimap:2.2.1 (#26615) Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com> --- .../repos/builtin/packages/qualimap/package.py | 26 ++++++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 var/spack/repos/builtin/packages/qualimap/package.py diff --git a/var/spack/repos/builtin/packages/qualimap/package.py b/var/spack/repos/builtin/packages/qualimap/package.py new file mode 100644 index 0000000000..a9e2a4e0bd --- /dev/null +++ b/var/spack/repos/builtin/packages/qualimap/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Qualimap(Package): + """Qualimap 2 is a platform-independent application written in Java + and R that provides both a Graphical User Inteface (GUI) and a + command-line interface to facilitate the quality control of alignment + sequencing data and its derivatives like feature counts.""" + + homepage = "http://qualimap.conesalab.org/" + url = "https://bitbucket.org/kokonech/qualimap/downloads/qualimap_v2.2.1.zip" + + version('2.2.1', sha256='08f1d66e49c83c76c56c4225c53aee44f41e0592c8bdc84b8c4ecd975700e045') + + depends_on('java', type='run') + + def setup_run_environment(self, env): + env.prepend_path('PATH', prefix) + + def install(self, spec, prefix): + install_tree('.', prefix) -- cgit v1.2.3-70-g09d2