From 9f7dbd7f2ddfd169d73ae086963aced0eb8f0f5d Mon Sep 17 00:00:00 2001 From: Sinan Date: Sun, 25 Mar 2018 06:50:17 -0700 Subject: new package: Seqan (bioinformatics) (#7588) * new package: Seqan (bioinformatics) * add compiler requirements as conflicts * fix typo * add dependency types * correct checksum --- var/spack/repos/builtin/packages/seqan/package.py | 52 +++++++++++++++++++++++ 1 file changed, 52 insertions(+) create mode 100644 var/spack/repos/builtin/packages/seqan/package.py diff --git a/var/spack/repos/builtin/packages/seqan/package.py b/var/spack/repos/builtin/packages/seqan/package.py new file mode 100644 index 0000000000..cbdba07504 --- /dev/null +++ b/var/spack/repos/builtin/packages/seqan/package.py @@ -0,0 +1,52 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +from spack import * + + +class Seqan(CMakePackage): + """SeqAn is an open source C++ library of efficient algorithms and data + structures for the analysis of sequences with the focus on biological data. + Our library applies a unique generic design that guarantees high + performance, generality, extensibility, and integration with other + libraries. SeqAn is easy to use and simplifies the development of new + software tools with a minimal loss of performance""" + + homepage = "https://www.seqan.de" + url = "https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz" + + version('2.4.0', 'd899821e295fed0a22e08099f40cbc17') + + depends_on('cmake@3.4.0:', type='build') + depends_on('python@2.7.0:', type='build') + depends_on('py-nose', type='build') + depends_on('py-sphinx', type='build') + depends_on('boost', type=('build', 'link')) + depends_on('zlib', type=('build', 'link')) + depends_on('bzip2', type=('build', 'link')) + + conflicts('%intel@:16.0.4') + conflicts('%gcc@:4.9.4') + conflicts('%llvm@:3.5.1') -- cgit v1.2.3-70-g09d2