From 9fe7000dda636cefb4c8f0424b844aa214c41216 Mon Sep 17 00:00:00 2001 From: 健美猞猁 Date: Wed, 5 Sep 2018 03:35:33 +0800 Subject: Bamdst: a new package. (#9113) * Bamdst: a new package. * Remove duplicate make() in install(). --- var/spack/repos/builtin/packages/bamdst/package.py | 46 ++++++++++++++++++++++ 1 file changed, 46 insertions(+) create mode 100644 var/spack/repos/builtin/packages/bamdst/package.py diff --git a/var/spack/repos/builtin/packages/bamdst/package.py b/var/spack/repos/builtin/packages/bamdst/package.py new file mode 100644 index 0000000000..230c8edb57 --- /dev/null +++ b/var/spack/repos/builtin/packages/bamdst/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Bamdst(MakefilePackage): + "Bamdst is a a lightweight bam file depth statistical tool." + + homepage = "https://github.com/shiquan/bamdst" + git = "https://github.com/shiquan/bamdst.git" + + version('master', git='https://github.com/shiquan/bamdst.git') + + depends_on('zlib') + + parallel = False + + def edit(self, spec, prefix): + makefile = FileFilter('Makefile') + makefile.filter('CC= .*', 'CC = cc') + + def install(self, spec, prefix): + mkdir(prefix.bin) + install('bamdst', prefix.bin) -- cgit v1.2.3-70-g09d2