From a0843e96348f5c019d62a32814646682846f7de0 Mon Sep 17 00:00:00 2001
From: takanori-ihara <62980219+takanori-ihara@users.noreply.github.com>
Date: Fri, 18 Dec 2020 01:47:01 +0900
Subject: biobambam2: new package at v2.0.177 (#20392)

---
 .../repos/builtin/packages/biobambam2/package.py   | 26 ++++++++++++++++++++++
 1 file changed, 26 insertions(+)
 create mode 100644 var/spack/repos/builtin/packages/biobambam2/package.py

diff --git a/var/spack/repos/builtin/packages/biobambam2/package.py b/var/spack/repos/builtin/packages/biobambam2/package.py
new file mode 100644
index 0000000000..615e88a713
--- /dev/null
+++ b/var/spack/repos/builtin/packages/biobambam2/package.py
@@ -0,0 +1,26 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Biobambam2(AutotoolsPackage):
+    """Tools for early stage alignment file processing"""
+
+    homepage = "https://gitlab.com/german.tischler/biobambam2"
+    url      = "https://gitlab.com/german.tischler/biobambam2/-/archive/2.0.177-release-20201112105453/biobambam2-2.0.177-release-20201112105453.tar.gz"
+
+    version('2.0.177', sha256='ad0a418fb49a31996a105a1a275c0d1dfc8b84aa91d48fa1efb6ff4fe1e74181',
+            url='https://gitlab.com/german.tischler/biobambam2/-/archive/2.0.177-release-20201112105453/biobambam2-2.0.177-release-20201112105453.tar.gz')
+
+    depends_on('autoconf', type='build')
+    depends_on('automake', type='build')
+    depends_on('libtool',  type='build')
+    depends_on('m4',       type='build')
+    depends_on('libmaus2')
+
+    def configure_args(self):
+        args = ['--with-libmaus2={0}'.format(self.spec['libmaus2'].prefix)]
+        return args
-- 
cgit v1.2.3-70-g09d2