From ac29b70d188a5b35970477c42dfcb4a6f783b588 Mon Sep 17 00:00:00 2001 From: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> Date: Wed, 29 Sep 2021 15:05:34 +0200 Subject: py-dipy: add new package (#26331) --- .../repos/builtin/packages/py-dipy/package.py | 38 ++++++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 var/spack/repos/builtin/packages/py-dipy/package.py diff --git a/var/spack/repos/builtin/packages/py-dipy/package.py b/var/spack/repos/builtin/packages/py-dipy/package.py new file mode 100644 index 0000000000..6f66af3ce8 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-dipy/package.py @@ -0,0 +1,38 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyDipy(PythonPackage): + """ Diffusion MRI utilities in python. + + DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic + methods for spatial normalization, signal processing, machine learning, + statistical analysis and visualization of medical images. Additionally, it + contains specialized methods for computational anatomy including diffusion, + perfusion and structural imaging. + """ + + homepage = "https://dipy.org/" + pypi = "dipy/dipy-1.4.1.tar.gz" + + version('1.4.1', sha256='b4bf830feae751f3f985d54cb71031fc35cea612838320f1f74246692b8a3cc0') + + depends_on('python@3.6:', type=('build', 'run')) + depends_on('py-setuptools', type='build') + depends_on('py-cython@0.29:', type=('build')) + depends_on('py-numpy@1.12.0:', type=('build', 'run')) + depends_on('py-scipy@1.0:', type=('build', 'run')) + depends_on('py-nibabel@3.0.0:', type=('build', 'run')) + depends_on('py-h5py@2.5.0:', type=('build', 'run')) + depends_on('py-packaging@19.0:', type=('build', 'run')) + depends_on('py-tqdm@4.30.0:', type=('build', 'run')) + + # Prevent passing --single-version-externally-managed to + # setup.py, to avoid + # error: option --single-version-externally-managed not recognized + def install_args(self, spec, prefix): + return ['--prefix={0}'.format(prefix), '--root=/'] -- cgit v1.2.3-70-g09d2