From b6425da50f3ff1e894184dd55b1b87ae8c018066 Mon Sep 17 00:00:00 2001
From: Christopher Christofi
<77968333+ChristopherChristofi@users.noreply.github.com>
Date: Sat, 23 Mar 2024 11:46:03 +0000
Subject: New package: qctool (#43326)
---
var/spack/repos/builtin/packages/qctool/package.py | 28 ++++++++++++++++++++++
1 file changed, 28 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/qctool/package.py
diff --git a/var/spack/repos/builtin/packages/qctool/package.py b/var/spack/repos/builtin/packages/qctool/package.py
new file mode 100644
index 0000000000..8933381653
--- /dev/null
+++ b/var/spack/repos/builtin/packages/qctool/package.py
@@ -0,0 +1,28 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Qctool(WafPackage):
+ """QCTOOL is a command-line utility program for manipulation and quality
+ control of gwas datasets and other genome-wide data. This repository contains
+ the source code for QCTOOL and a number of other command-line programs that
+ manipulate gwas datasets and other genomic data, such as: Inthinnerator,
+ HPTEST, and LDBIRD."""
+
+ homepage = "https://www.chg.ox.ac.uk/~gav/qctool_v2/index.html"
+
+ license("BSL-1.0")
+
+ version(
+ "2.2.0",
+ sha256="7ba47998a2559193483cebe3710ce14d4e5d55d2e123840b4d1614b88459a9fc",
+ url="https://enkre.net/cgi-bin/code/qctool/tarball/86639c1ad4/qctool-86639c1ad4.tar.gz",
+ )
+
+ # Required external libraries as detailed in Prerequisites:
+ # https://enkre.net/cgi-bin/code/qctool/wiki?name=Compiling+QCTOOL
+ depends_on("zlib")
--
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