From bd0699b02684cca0341c5899b4e72edd021f055c Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Mon, 24 Jul 2017 15:50:32 -0500 Subject: stringtie: new package (#4878) --- .../repos/builtin/packages/stringtie/package.py | 41 ++++++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 var/spack/repos/builtin/packages/stringtie/package.py diff --git a/var/spack/repos/builtin/packages/stringtie/package.py b/var/spack/repos/builtin/packages/stringtie/package.py new file mode 100644 index 0000000000..9baf545a4c --- /dev/null +++ b/var/spack/repos/builtin/packages/stringtie/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Stringtie(MakefilePackage): + """StringTie is a fast and highly efficient assembler of RNA-Seq alignments + into potential transcripts.""" + + homepage = "https://ccb.jhu.edu/software/stringtie" + url = "https://github.com/gpertea/stringtie/archive/v1.3.3b.tar.gz" + + version('1.3.3b', '11a43260b18e4272182380e922445d88') + + depends_on('samtools') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('stringtie', prefix.bin) -- cgit v1.2.3-70-g09d2