From c00ed0d9428c99c388cfe332867e13e52dae8111 Mon Sep 17 00:00:00 2001
From: Justin S <3630356+codeandkey@users.noreply.github.com>
Date: Fri, 17 May 2019 14:33:04 -0500
Subject: py-metasv: new package at 0.5.4 (#11476)

---
 .../repos/builtin/packages/py-metasv/package.py     | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)
 create mode 100644 var/spack/repos/builtin/packages/py-metasv/package.py

diff --git a/var/spack/repos/builtin/packages/py-metasv/package.py b/var/spack/repos/builtin/packages/py-metasv/package.py
new file mode 100644
index 0000000000..02681d704a
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-metasv/package.py
@@ -0,0 +1,21 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyMetasv(PythonPackage):
+    """An accurate and integrative structural-variant caller for next
+       generation sequencing"""
+
+    homepage = "http://bioinform.github.io/metasv/"
+    url      = "https://github.com/bioinform/metasv/archive/0.5.4.tar.gz"
+
+    version('0.5.4', sha256='c8613b56f44b9303b9e126618b2aee9dbc0b26c03d14e70e1aeed918582eeec1')
+
+    depends_on('py-pybedtools@0.6.9', type=('build', 'run'))
+    depends_on('py-pysam', type=('build', 'run'))
+    depends_on('py-pyvcf', type=('build', 'run'))
+    depends_on('py-setuptools', type='build')
-- 
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