From c104fa233af5de80bd5429cc33aa0e42bf4d0002 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Thu, 13 Jul 2017 08:32:55 -0500 Subject: infernal: new package (#4724) --- .../repos/builtin/packages/infernal/package.py | 49 ++++++++++++++++++++++ 1 file changed, 49 insertions(+) create mode 100644 var/spack/repos/builtin/packages/infernal/package.py diff --git a/var/spack/repos/builtin/packages/infernal/package.py b/var/spack/repos/builtin/packages/infernal/package.py new file mode 100644 index 0000000000..8719d0a227 --- /dev/null +++ b/var/spack/repos/builtin/packages/infernal/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Infernal(AutotoolsPackage): + """Infernal (INFERence of RNA ALignment) is for searching DNA sequence + databases for RNA structure and sequence similarities. It is an + implementation of a special case of profile stochastic context-free + grammars called covariance models (CMs).""" + + homepage = "http://eddylab.org/infernal/" + url = "http://eddylab.org/infernal/infernal-1.1.2.tar.gz" + + version('1.1.2', 'a73e6bbab0c4b79af2cc4c0aabb8accc') + + variant('mpi', default=False, description='Enable MPI parallel support') + + depends_on('mpi', when='+mpi') + + def configure_args(self): + args = [] + if '+mpi' in self.spec: + args.append('--enable-mpi') + else: + args.append('--disable-mpi') + return args -- cgit v1.2.3-70-g09d2