From e004db8f77a5e8b1f5d4341577e06084d21f48fb Mon Sep 17 00:00:00 2001 From: George Young Date: Thu, 14 Sep 2023 19:52:40 +0100 Subject: meme: add 5.5.4, correct dependencies (#40014) * meme: add 5.5.4, correct dependencies * variant renaming --------- Co-authored-by: LMS Bioinformatics --- var/spack/repos/builtin/packages/meme/package.py | 45 +++++++++++++----------- 1 file changed, 24 insertions(+), 21 deletions(-) diff --git a/var/spack/repos/builtin/packages/meme/package.py b/var/spack/repos/builtin/packages/meme/package.py index c73a0a43b8..3ebe9739b0 100644 --- a/var/spack/repos/builtin/packages/meme/package.py +++ b/var/spack/repos/builtin/packages/meme/package.py @@ -15,6 +15,7 @@ class Meme(AutotoolsPackage): homepage = "https://meme-suite.org" url = "http://meme-suite.org/meme-software/5.1.1/meme-5.1.1.tar.gz" + version("5.5.4", sha256="cda6011c2b855bf2563c4e7a2c255e11e99b5b6e5e73736ff008942507580153") version("5.3.0", sha256="b2ddec9db972fcf77b29c7deb62df8b1dd8a6638c13c1aa06a5d563c4a7ff756") version("5.2.0", sha256="0cbf8c2172e9b6c07855b8aeec457f4825f0b132f8cbb11192880e2f6033f54f") version("5.1.1", sha256="38d73d256d431ad4eb7da2c817ce56ff2b4e26c39387ff0d6ada088938b38eb5") @@ -22,35 +23,37 @@ class Meme(AutotoolsPackage): version("4.11.4", sha256="3e869ff57e327a9c8615dbef784e3f1095f7f7a0120cecd55efe10c3f2ee8eb3") variant("mpi", default=True, description="Enable MPI support") - variant("image-magick", default=False, description="Enable image-magick for png output") + variant("magick", default=False, description="Enable imagemagick for png output") - depends_on("zlib-api", type=("link")) - depends_on("libgcrypt", type=("link")) - depends_on("perl", type=("build", "run")) - depends_on("python@2.7:", type=("build", "run")) - depends_on("mpi", when="+mpi") - depends_on("imagemagick", type=("build", "run"), when="+image-magick") + # Perl runtime deps + depends_on("perl@5.16:", type=("build", "run")) depends_on("perl-xml-parser", type=("build", "run")) - depends_on("perl-xml-simple", when="@4.5.0:") - depends_on("libxml2", type=("build", "run")) - depends_on("libxslt", type=("build", "run")) + depends_on("perl-xml-simple", type=("build", "run")) + # Python runtime deps + depends_on("python", type=("build", "run")) + # Build deps + depends_on("zlib-ng") + depends_on("ghostscript") + depends_on("libxml2") + depends_on("libxslt") + # Variant deps + depends_on("imagemagick", type=("build", "run"), when="+magick") + depends_on("mpi", when="+mpi") patch("arm.patch", when="%arm") + def patch(self): + # Remove flags not recognized by the NVIDIA compiler + if self.spec.satisfies("%nvhpc"): + filter_file("-fno-common", "", "configure") + filter_file("-Wno-unused", "", "configure") + def url_for_version(self, version): url = "http://meme-suite.org/meme-software/{0}/meme{1}{2}.tar.gz" sep = "-" if version >= Version("5.0.2") else "_" return url.format(version.up_to(3), sep, version) def configure_args(self): - spec = self.spec - args = [] - if "~mpi" in spec: - args += ["--enable-serial"] - return args - - def patch(self): - # Remove flags not recognized by the NVIDIA compiler - if self.spec.satisfies("%nvhpc"): - filter_file("-fno-common", "", "configure") - filter_file("-Wno-unused", "", "configure") + if "~mpi" in self.spec: + return ["--enable-serial"] + return [] -- cgit v1.2.3-60-g2f50