From e0db1f0268c192350fe38baac85620a504b2ce70 Mon Sep 17 00:00:00 2001 From: George Hartzell Date: Tue, 26 Jul 2016 17:22:44 -0400 Subject: Add package for exonerate --- .../repos/builtin/packages/exonerate/package.py | 44 ++++++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 var/spack/repos/builtin/packages/exonerate/package.py diff --git a/var/spack/repos/builtin/packages/exonerate/package.py b/var/spack/repos/builtin/packages/exonerate/package.py new file mode 100644 index 0000000000..dcc20af2f9 --- /dev/null +++ b/var/spack/repos/builtin/packages/exonerate/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Exonerate(Package): + """Pairwise sequence alignment of DNA and proteins""" + + homepage = "http://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate" + url = "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz" + + version('2.4.0', '126fbade003b80b663a1d530c56f1904') + + depends_on('pkg-config', type="build") + depends_on('glib') + + parallel = False + + def install(self, spec, prefix): + configure('--prefix={0}'.format(prefix), '--disable-debug', '--disable-dependency-tracking') + make() + make('install') -- cgit v1.2.3-60-g2f50