From e7fc9ea243b9bc81528a62c5f1894e4084abd69e Mon Sep 17 00:00:00 2001 From: Luke Diorio-Toth Date: Mon, 5 Dec 2022 04:38:56 -0600 Subject: mmseqs2: new package (#34189) --- .../repos/builtin/packages/mmseqs2/package.py | 39 ++++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 var/spack/repos/builtin/packages/mmseqs2/package.py diff --git a/var/spack/repos/builtin/packages/mmseqs2/package.py b/var/spack/repos/builtin/packages/mmseqs2/package.py new file mode 100644 index 0000000000..9a0a67fbf5 --- /dev/null +++ b/var/spack/repos/builtin/packages/mmseqs2/package.py @@ -0,0 +1,39 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class Mmseqs2(CMakePackage): + """MMseqs2 (Many-against-Many sequence searching) is a software suite to + search and cluster huge protein and nucleotide sequence sets""" + + homepage = "https://github.com/soedinglab/MMseqs2" + url = "https://github.com/soedinglab/MMseqs2/archive/refs/tags/14-7e284.tar.gz" + + version("14-7e284", sha256="a15fd59b121073fdcc8b259fc703e5ce4c671d2c56eb5c027749f4bd4c28dfe1") + version("13-45111", sha256="6444bb682ebf5ced54b2eda7a301fa3e933c2a28b7661f96ef5bdab1d53695a2") + + variant("openmp", default=False, description="build with OpenMP support") + variant("mpi", default=False, description="build with MPI support") + + depends_on("zstd") + depends_on("mpi", when="+mpi") + + # apple-clang will build with +openmp with llvm-openmp as a dependency + # however when running with real data, it threw segmentation faults + conflicts("%apple-clang", when="+openmp") + + def cmake_args(self): + spec = self.spec + args = [] + args.append("-DVERSION_OVERRIDE=%s" % self.spec.version) + args.append("-DUSE_SYSTEM_ZSTD=1") + if "~openmp" in spec: + args.append("-DREQUIRE_OPENMP=0") + if "~mpi" in spec: + args.append("-DHAVE_MPI=0") + return args -- cgit v1.2.3-60-g2f50