From e92554414b1596735d8e0d5bab60abcf5c16d892 Mon Sep 17 00:00:00 2001
From: George Young <A-N-Other@users.noreply.github.com>
Date: Thu, 8 Jun 2023 21:01:56 +0100
Subject: gatk: add 4.4, update to java@17 (#38211)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
---
var/spack/repos/builtin/packages/gatk/package.py | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/var/spack/repos/builtin/packages/gatk/package.py b/var/spack/repos/builtin/packages/gatk/package.py
index ba6edd46b2..2e84107b61 100644
--- a/var/spack/repos/builtin/packages/gatk/package.py
+++ b/var/spack/repos/builtin/packages/gatk/package.py
@@ -19,6 +19,7 @@ class Gatk(Package):
list_url = "https://github.com/broadinstitute/gatk/releases"
maintainers("snehring")
+ version("4.4.0.0", sha256="444600f7b38b46ad0b3606b7d40ce921e0ff1910a50165872f1c73c7c4a1a390")
version("4.3.0.0", sha256="e2c27229b34c3e22445964adf00639a0909887bbfcc040f6910079177bc6e2dd")
version("4.2.6.1", sha256="1125cfc862301d437310506c8774d36c3a90d00d52c7b5d6b59dac7241203628")
version("4.2.2.0", sha256="ddd902441d1874493796566159288e9df178714ac18216ba05092136db1497fd")
@@ -61,7 +62,8 @@ class Gatk(Package):
# output.
variant("r", default=False, description="Use R for plotting")
- depends_on("java@8:", type="run")
+ depends_on("java@17", type="run", when="@4.4:")
+ depends_on("java@8", type="run", when="@:4.3")
depends_on("python@2.6:2.8,3.6:", type="run", when="@4.0:")
depends_on("r@3.2:", type="run", when="@4.0: +r")
--
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