From f9c820c39f8f6a8f626e93a9cfa1a99e2053a67d Mon Sep 17 00:00:00 2001 From: lingnanyuan <1297162327@qq.com> Date: Thu, 30 Nov 2017 02:13:31 -0600 Subject: r-phyloseq: Create new package. (#6518) --- .../repos/builtin/packages/r-phyloseq/package.py | 53 ++++++++++++++++++++++ 1 file changed, 53 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-phyloseq/package.py diff --git a/var/spack/repos/builtin/packages/r-phyloseq/package.py b/var/spack/repos/builtin/packages/r-phyloseq/package.py new file mode 100644 index 0000000000..8976ec7e27 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-phyloseq/package.py @@ -0,0 +1,53 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RPhyloseq(RPackage): + """phyloseq provides a set of classes and tools to facilitate the import, + storage, analysis, and graphical display of microbiome census data.""" + + homepage = "https://www.bioconductor.org/packages/phyloseq/" + url = "https://git.bioconductor.org/packages/phyloseq" + + version('1.20.0', git='https://git.bioconductor.org/packages/phyloseq', commit='107d1d5e3437a6e33982c06a548d3cc91df2a7e0') + + depends_on('r@3.4.0:3.4.9', when='@1.20.0') + depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-ade4', type=('build', 'run')) + depends_on('r-ape', type=('build', 'run')) + depends_on('r-biomformat', type=('build', 'run')) + depends_on('r-biostrings', type=('build', 'run')) + depends_on('r-cluster', type=('build', 'run')) + depends_on('r-data-table', type=('build', 'run')) + depends_on('r-foreach', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-igraph', type=('build', 'run')) + depends_on('r-multtest', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-scales', type=('build', 'run')) + depends_on('r-vegan', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) -- cgit v1.2.3-70-g09d2