From 1bf87dbb5d545d0f8b325c2118bfff91bd1cbc1f Mon Sep 17 00:00:00 2001 From: Marco De La Pierre Date: Sat, 17 Dec 2022 05:28:51 +0800 Subject: Adding first bunch of recipes for dependencies of nf-core-tools (#34537) * nextflow recipe: added latest stable version * tower-cli recipe: added latest release * recipes tower-agent and tower-cli renamed to nf-tower-agent and nf-tower-cli * recipes nf-tower-agent and nf-tower-cli: small fix * nf-core-tools recipe: added most py- dependencies * nf-core-tools: recipe without galaxy-tool-util (for testing) * fixed typos in py-yacman recipe * fixed typos in py-pytest-workflow recipe * fixed typo in nf-core-tools recipe * fixed typos in py-yacman recipe * fixes in recipes for py-questionary and py-url-normalize * fixes to py-yacman recipe * style fixes to py- packages that are dependencies to nf-core-tools * fix in py-requests-cache recipe * added missing dep in py-requests-cache recipe * nf-core-tools deps: removed redundant python dep for py packages oyaml and piper * nf-core-tools recipe: final, incl dep on py-galaxy-tool-util * nf-core-tools: new version with extra dependency * commit to merge packages on focus from update/nextflow-tools * nf-core: commenting galaxy dep for this pr * Update var/spack/repos/builtin/packages/py-requests-cache/package.py Co-authored-by: Adam J. Stewart * Update var/spack/repos/builtin/packages/py-requests-cache/package.py Co-authored-by: Adam J. Stewart * removed nf-core-tools from this branch, will be back at the end Co-authored-by: Adam J. Stewart --- .../repos/builtin/packages/py-refgenie/package.py | 25 ++++++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 var/spack/repos/builtin/packages/py-refgenie/package.py (limited to 'var/spack/repos/builtin/packages/py-refgenie/package.py') diff --git a/var/spack/repos/builtin/packages/py-refgenie/package.py b/var/spack/repos/builtin/packages/py-refgenie/package.py new file mode 100644 index 0000000000..d2a5904a96 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-refgenie/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class PyRefgenie(PythonPackage): + """Refgenie manages storage, access, and transfer of reference genome resources.""" + + homepage = "http://refgenie.databio.org" + pypi = "refgenie/refgenie-0.12.1.tar.gz" + + version("0.12.1", sha256="cfd007ed0981e00d019deb49aaea896952341096494165cb8378488850eec451") + + depends_on("python@3.5:", type=("build", "run")) + depends_on("py-setuptools", type="build") + + depends_on("py-logmuse@0.2.6:", type=("build", "run")) + depends_on("py-piper@0.12.1:", type=("build", "run")) + depends_on("py-pyfaidx@0.5.5.2:", type=("build", "run")) + depends_on("py-refgenconf@0.12.2:", type=("build", "run")) + depends_on("py-yacman@0.8.3:", type=("build", "run")) -- cgit v1.2.3-60-g2f50