From 0116c4471467777c567cd9af3a33d294db237b81 Mon Sep 17 00:00:00 2001
From: Nick Booher <njbooher@iastate.edu>
Date: Wed, 2 Sep 2020 11:29:40 -0500
Subject: ldak: new package at 5.1 (#18431)
* ldak: new package at 5.1
* flake8
* Re-run tests
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---
var/spack/repos/builtin/packages/ldak/package.py | 42 ++++++++++++++++++++++++
1 file changed, 42 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/ldak/package.py
(limited to 'var')
diff --git a/var/spack/repos/builtin/packages/ldak/package.py b/var/spack/repos/builtin/packages/ldak/package.py
new file mode 100644
index 0000000000..6114f3bc90
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ldak/package.py
@@ -0,0 +1,42 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Ldak(Package):
+ """LDAK is a software package for analyzing GWAS data"""
+
+ homepage = "http://dougspeed.com/ldak/"
+ url = "http://dougspeed.com/wp-content/uploads/source.zip"
+
+ version('5.1', sha256='9a3fe2fafc7b68cc57a17748a64db66f76b13acbd5e9a538ede20a46447fcf4a')
+
+ variant('mkl', default=False, description='Use MKL')
+
+ depends_on('zlib')
+ depends_on('blas')
+ depends_on('lapack')
+ depends_on('mkl', when='+mkl')
+
+ def setup_build_environment(self, env):
+ env.append_flags('LDLIBS', '-lm')
+ env.append_flags('LDLIBS', '-lz')
+ libs = (self.spec['lapack'].libs + self.spec['blas'].libs).ld_flags
+ env.append_flags('LDLIBS', libs)
+ if self.spec.platform == 'darwin':
+ env.append_flags('LDLIBS', 'libqsopt.mac.a')
+ else:
+ env.append_flags('LDLIBS', 'libqsopt.linux.a')
+
+ def install(self, spec, prefix):
+ if '+mkl' in spec:
+ make('ldak')
+ mkdirp(prefix.bin)
+ install('ldak', prefix.bin)
+ else:
+ make('ldak_slow')
+ mkdirp(prefix.bin)
+ install('ldak_slow', prefix.bin.ldak)
--
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