From 0c96c330ec1281bbf8cc44fad922964448a8ddb0 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Mon, 24 Jul 2017 18:01:56 -0500 Subject: subread: new package (#4882) --- .../repos/builtin/packages/subread/package.py | 52 ++++++++++++++++++++++ 1 file changed, 52 insertions(+) create mode 100644 var/spack/repos/builtin/packages/subread/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/subread/package.py b/var/spack/repos/builtin/packages/subread/package.py new file mode 100644 index 0000000000..b09e398602 --- /dev/null +++ b/var/spack/repos/builtin/packages/subread/package.py @@ -0,0 +1,52 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import sys + + +class Subread(MakefilePackage): + """The Subread software package is a tool kit for processing next-gen + sequencing data.""" + + homepage = "http://subread.sourceforge.net/" + url = "https://downloads.sourceforge.net/project/subread/subread-1.5.2/subread-1.5.2-source.tar.gz" + + version('1.5.2', '817d2a46d87fcef885c8832475b8b247') + + depends_on('zlib') + + def build(self, spec, prefix): + plat = sys.platform + with working_dir('src'): + if plat.startswith('linux'): + make('-f', 'Makefile.Linux') + elif plat.startswith('darwin'): + make('-f', 'Makefile.MacOS') + else: + raise InstallError("The communication mechanism %s is not" + "supported" % plat) + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) -- cgit v1.2.3-70-g09d2