From 0dee143c72767f2ecbe7e9a613bc465558a83dcb Mon Sep 17 00:00:00 2001 From: 健美猫 Date: Sun, 21 Jan 2018 01:38:31 +0800 Subject: A new package: lumpy-sv. (#7009) --- .../repos/builtin/packages/lumpy-sv/package.py | 43 ++++++++++++++++++++++ 1 file changed, 43 insertions(+) create mode 100644 var/spack/repos/builtin/packages/lumpy-sv/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/lumpy-sv/package.py b/var/spack/repos/builtin/packages/lumpy-sv/package.py new file mode 100644 index 0000000000..a2ffca2b8e --- /dev/null +++ b/var/spack/repos/builtin/packages/lumpy-sv/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class LumpySv(MakefilePackage): + """A probabilistic framework for structural variant discovery.""" + + homepage = "https://github.com/arq5x/lumpy-sv" + url = "https://github.com/arq5x/lumpy-sv/archive/0.2.13.tar.gz" + + version('0.2.13', '36929d29fc3a171d3abbe1d93f9f3b50') + + depends_on('htslib') + + def edit(self, spec, prefix): + makefile = FileFilter('Makefile') + makefile.filter('export CXX .*', '') + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) -- cgit v1.2.3-60-g2f50