From 105ac0c3772ae45cca1f0b28bf4e677bd9703052 Mon Sep 17 00:00:00 2001 From: George Young Date: Mon, 26 Jun 2023 13:59:05 +0100 Subject: mmseqs2: patching to support building with %gcc@13: (#38296) Co-authored-by: LMS Bioinformatics --- var/spack/repos/builtin/packages/mmseqs2/package.py | 8 ++++++++ 1 file changed, 8 insertions(+) (limited to 'var') diff --git a/var/spack/repos/builtin/packages/mmseqs2/package.py b/var/spack/repos/builtin/packages/mmseqs2/package.py index 5ff1de3314..a081a416e5 100644 --- a/var/spack/repos/builtin/packages/mmseqs2/package.py +++ b/var/spack/repos/builtin/packages/mmseqs2/package.py @@ -23,6 +23,14 @@ class Mmseqs2(CMakePackage): depends_on("zstd") depends_on("mpi", when="+mpi") + # patch to support building with gcc@13: + patch( + "https://github.com/soedinglab/MMseqs2/commit/3e43617.patch?full_index=1", + sha256="673737ac545260e7800ca191c6eee14feef3318d9cfa5005db32bd2ab3c006fe", + when="%gcc@13:", + level=1, + ) + # apple-clang will build with +openmp with llvm-openmp as a dependency # however when running with real data, it threw segmentation faults conflicts("%apple-clang", when="+openmp") -- cgit v1.2.3-60-g2f50