From 12a22eebc76bfec6c6172f0e4069d2cb4b6cab6f Mon Sep 17 00:00:00 2001 From: George Young Date: Wed, 21 Jun 2023 20:43:48 +0100 Subject: tetranscripts: new package @2.2.3 (#38485) * tetranscripts: new package @2.2.3 * tidying up --------- Co-authored-by: LMS Bioinformatics --- .../builtin/packages/tetranscripts/package.py | 23 ++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 var/spack/repos/builtin/packages/tetranscripts/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/tetranscripts/package.py b/var/spack/repos/builtin/packages/tetranscripts/package.py new file mode 100644 index 0000000000..a01f26c1dc --- /dev/null +++ b/var/spack/repos/builtin/packages/tetranscripts/package.py @@ -0,0 +1,23 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Tetranscripts(PythonPackage): + """TEtranscripts: Tools for estimating differential enrichment of Transposable Elements + and other highly repetitive regions.""" + + homepage = "https://hammelllab.labsites.cshl.edu/software/#TEtranscripts" + pypi = "TEtranscripts/TEtranscripts-2.2.3.tar.gz" + + version("2.2.3", sha256="e53577e8e73e41c6495fb819977e3e537bbeac7b2fa1635029201a37ee0bf7b8") + + # python dependencies + depends_on("py-setuptools", type="build") + depends_on("py-pysam@0.9:", type=("build", "run")) + # external dependencies + depends_on("r@2.15:", type="run") + depends_on("r-deseq2@1.10:", type="run") -- cgit v1.2.3-70-g09d2