From 1a34bebe79f4a0b8b2d15842271ed4e361f0c838 Mon Sep 17 00:00:00 2001
From: Levi Baber <baberlevi@gmail.com>
Date: Wed, 6 Feb 2019 13:46:35 -0600
Subject: genemark et package: add version 4.38 (#10519)
Also add heu_dir to bin/
---
var/spack/repos/builtin/packages/genemark-et/package.py | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
(limited to 'var')
diff --git a/var/spack/repos/builtin/packages/genemark-et/package.py b/var/spack/repos/builtin/packages/genemark-et/package.py
index 621ef7e320..bb41a3e7ff 100644
--- a/var/spack/repos/builtin/packages/genemark-et/package.py
+++ b/var/spack/repos/builtin/packages/genemark-et/package.py
@@ -10,10 +10,16 @@ import glob
class GenemarkEt(Package):
"""Gene Prediction in Bacteria, archaea, Metagenomes and
- Metatranscriptomes."""
+ Metatranscriptomes.
+ When downloaded this file is named the same for all versions.
+ Spack will search your current directory for the download file.
+ Alternatively, add this file to a mirror so that Spack can find it.
+ For instructions on how to set up a mirror, see
+ http://spack.readthedocs.io/en/latest/mirrors.html"""
homepage = "http://topaz.gatech.edu/GeneMark"
+ version('4.38', sha256='cee3bd73d331be44159eac15469560d0b07ffa2c98ac764c37219e1f3b7d3146')
version('4.33', '4ab7d7d3277a685dfb49e11bc5b493c3')
depends_on('perl', type=('build', 'run'))
@@ -23,12 +29,14 @@ class GenemarkEt(Package):
def install(self, spec, prefix):
mkdirp(prefix.bin)
+ mkdirp(prefix.bin.heu_dir)
with working_dir('gmes_petap'):
install_tree('lib', prefix.lib)
files = glob.iglob('*')
for file in files:
if os.path.isfile(file):
install(file, prefix.bin)
+ install_tree('heu_dir', prefix.bin.heu_dir)
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('PERL5LIB', prefix.lib)
--
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