From 221a1293aa038ee794d49c533b8836e073040be0 Mon Sep 17 00:00:00 2001 From: Levi Baber Date: Mon, 13 Aug 2018 22:21:03 -0500 Subject: r-genelendatabase: new package (#8938) * r-genelendatabase: new package * r-genelendatabase: git not url * r-genelendatabase: add runtime deps and fix package type * r-genelendatabase: dep type --- .../builtin/packages/r-genelendatabase/package.py | 39 ++++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-genelendatabase/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/r-genelendatabase/package.py b/var/spack/repos/builtin/packages/r-genelendatabase/package.py new file mode 100644 index 0000000000..6d0ac4b3fd --- /dev/null +++ b/var/spack/repos/builtin/packages/r-genelendatabase/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGenelendatabase(RPackage): + """Length of mRNA transcripts for a number of genomes and gene ID + formats, largely based on UCSC table browser""" + + homepage = "https://bioconductor.org/packages/release/data/experiment/html/geneLenDataBase.html" + git = "https://git.bioconductor.org/packages/geneLenDataBase.git" + + version('1.16.0', commit='c2a8b2359c6c59388853d6f6d15d71dffb17a198') + + depends_on('r@3.5.0:3.5.9', when='@1.16.0:', type=('build', 'run')) + depends_on('r-rtracklayer', type=('build', 'run')) + depends_on('r-genomicfeatures@1.3.15:', type=('build', 'run')) -- cgit v1.2.3-60-g2f50