From 2266aab5c50958b2660fdf904a89e3b68c65c732 Mon Sep 17 00:00:00 2001 From: "Adam J. Stewart" Date: Sun, 8 Dec 2019 09:29:51 -0600 Subject: Add new r-condop package (#14050) --- .../repos/builtin/packages/r-condop/package.py | 32 ++++++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-condop/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/r-condop/package.py b/var/spack/repos/builtin/packages/r-condop/package.py new file mode 100644 index 0000000000..5bbe0ccad6 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-condop/package.py @@ -0,0 +1,32 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RCondop(RPackage): + """CONDOP: Condition-Dependent Operon Predictions. + + An implementation of the computational strategy for the comprehensive + analysis of condition-dependent operon maps in prokaryotes proposed by + Fortino et al. (2014) . It uses RNA-seq + transcriptome profiles to improve prokaryotic operon map inference.""" + + homepage = "https://cloud.r-project.org/package=CONDOP" + url = "https://cloud.r-project.org/src/contrib/CONDOP_1.0.tar.gz" + list_url = "https://cloud.r-project.org/src/contrib/Archive/CONDOP" + + version('1.0', sha256='3a855880f5c6b33f949c7e6de53c8e014b4d72b7024a93878b344d3e52b5296a') + + depends_on('r-mclust', type=('build', 'run')) + depends_on('r-earth', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-seqinr', type=('build', 'run')) + depends_on('r-randomforest', type=('build', 'run')) + depends_on('r-rminer', type=('build', 'run')) + depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-iranges', type=('build', 'run')) -- cgit v1.2.3-70-g09d2