From 251282812bec2e2a355d8baad1efcf5c0b2200b3 Mon Sep 17 00:00:00 2001 From: snehring <7978778+snehring@users.noreply.github.com> Date: Mon, 26 Jun 2023 06:17:01 -0500 Subject: demuxlet: add new package (#38425) --- .../repos/builtin/packages/demuxlet/package.py | 35 ++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 var/spack/repos/builtin/packages/demuxlet/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/demuxlet/package.py b/var/spack/repos/builtin/packages/demuxlet/package.py new file mode 100644 index 0000000000..d87807fa2e --- /dev/null +++ b/var/spack/repos/builtin/packages/demuxlet/package.py @@ -0,0 +1,35 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Demuxlet(AutotoolsPackage): + """Genetic multiplexing of barcoded single cell RNA-seq""" + + homepage = "https://github.com/statgen/demuxlet" + url = "https://github.com/statgen/demuxlet" + git = "https://github.com/statgen/demuxlet.git" + + maintainers("snehring") + + version("20210211", commit="f5044eb9ed5c6678aa3a80a8f2be7db7748ee732") + + depends_on("autoconf", type="build") + depends_on("automake", type="build") + depends_on("libtool", type="build") + + depends_on("htslib@1.10") + depends_on("libdeflate", when="^htslib+libdeflate") + + def patch(self): + filter_file("-I ../../htslib/htslib", "", "Makefile.am", string=True) + filter_file("-I ../htslib/", "", "Makefile.am", string=True) + filter_file("../htslib/libhts.a", "-lhts", "Makefile.am", string=True) + if self.spec.satisfies("^htslib+libdeflate"): + filter_file("-lcrypto", "-lcrypto -ldeflate", "Makefile.am", string=True) + + def autoreconf(self, spec, prefix): + which("autoreconf")("-vfi") -- cgit v1.2.3-60-g2f50